Analysis of interatomic Contacts of Structural Units in PDB entry:
7OJY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7OJY entry

There are 3 chains in PDB entry 7OJY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ARG 258
B	MET 1	ARG 258
C	MET 1	ARG 258

There are 12 helices in PDB entry 7OJY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	194	201	Right-handed alpha
Helix 2	AA2	A	204	220	Right-handed alpha
Helix 3	AA3	A	224	239	Right-handed alpha
Helix 4	AA4	A	239	251	Right-handed alpha
Helix 5	AA5	B	194	201	Right-handed alpha
Helix 6	AA6	B	204	220	Right-handed alpha
Helix 7	AA7	B	224	239	Right-handed alpha
Helix 8	AA8	B	239	251	Right-handed alpha
Helix 9	AA9	C	194	201	Right-handed alpha
Helix 10	AB1	C	204	220	Right-handed alpha
Helix 11	AB2	C	224	239	Right-handed alpha
Helix 12	AB3	C	239	251	Right-handed alpha

There are 12 sheets in PDB entry 7OJY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	10	first strand
Strand 2	A	27	28	parallel
Strand 3	A	45	46	parallel
Strand 4	A	63	66	parallel
Strand 5	A	93	95	parallel
Strand 6	A	118	119	parallel
Strand 7	A	136	137	parallel
Strand 8	A	154	155	parallel
Strand 9	A	172	173	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	16	first strand
Strand 2	A	32	34	parallel
Strand 3	A	50	52	parallel
Strand 4	A	78	82	parallel
Strand 5	A	97	98	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	16	first strand
Strand 2	A	32	34	parallel
Strand 3	A	50	52	parallel
Strand 4	A	78	82	parallel
Strand 5	A	105	107	parallel
Strand 6	A	124	125	parallel
Strand 7	A	142	143	parallel
Strand 8	A	160	161	parallel

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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	21	22	first strand
Strand 2	A	39	40	parallel
Strand 3	A	57	58	parallel
Strand 4	A	87	88	parallel
Strand 5	A	112	113	parallel
Strand 6	A	130	131	parallel
Strand 7	A	148	149	parallel
Strand 8	A	166	167	parallel
Strand 9	A	181	184	parallel
Strand 10	A	189	193	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	10	first strand
Strand 2	B	27	28	parallel
Strand 3	B	45	46	parallel
Strand 4	B	63	66	parallel
Strand 5	B	93	95	parallel
Strand 6	B	118	119	parallel
Strand 7	B	136	137	parallel
Strand 8	B	154	155	parallel
Strand 9	B	172	173	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	16	first strand
Strand 2	B	32	34	parallel
Strand 3	B	50	52	parallel
Strand 4	B	78	82	parallel
Strand 5	B	97	98	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	16	first strand
Strand 2	B	32	34	parallel
Strand 3	B	50	52	parallel
Strand 4	B	78	82	parallel
Strand 5	B	105	107	parallel
Strand 6	B	124	125	parallel
Strand 7	B	142	143	parallel
Strand 8	B	160	161	parallel

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There are 10 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	21	22	first strand
Strand 2	B	39	40	parallel
Strand 3	B	57	58	parallel
Strand 4	B	87	88	parallel
Strand 5	B	112	113	parallel
Strand 6	B	130	131	parallel
Strand 7	B	148	149	parallel
Strand 8	B	166	167	parallel
Strand 9	B	181	184	parallel
Strand 10	B	189	193	anti-parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	10	first strand
Strand 2	C	27	28	parallel
Strand 3	C	45	46	parallel
Strand 4	C	63	66	parallel
Strand 5	C	93	95	parallel
Strand 6	C	118	119	parallel
Strand 7	C	136	137	parallel
Strand 8	C	154	155	parallel
Strand 9	C	172	173	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	15	16	first strand
Strand 2	C	32	34	parallel
Strand 3	C	50	52	parallel
Strand 4	C	78	82	parallel
Strand 5	C	97	98	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	15	16	first strand
Strand 2	C	32	34	parallel
Strand 3	C	50	52	parallel
Strand 4	C	78	82	parallel
Strand 5	C	105	107	parallel
Strand 6	C	124	125	parallel
Strand 7	C	142	143	parallel
Strand 8	C	160	161	parallel

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There are 10 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	21	22	first strand
Strand 2	C	39	40	parallel
Strand 3	C	57	58	parallel
Strand 4	C	87	88	parallel
Strand 5	C	112	113	parallel
Strand 6	C	130	131	parallel
Strand 7	C	148	149	parallel
Strand 8	C	166	167	parallel
Strand 9	C	181	184	parallel
Strand 10	C	189	193	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7OJY

Analysis of interatomic Contacts of Structural Units in PDB entry:
7OJY