Analysis of interatomic Contacts of Structural Units in PDB entry:
7OKC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7OKC entry

There is 1 chain in PDB entry 7OKC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -1ARG 262
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 7OKC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
198 205Right-handed alpha
Helix 2
AA2
A
208 224Right-handed alpha
Helix 3
AA3
A
228 241Right-handed alpha
Helix 4
AA4
A
242 245Right-handed 310
Helix 5
AA5
A
246 256Right-handed alpha
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There are 3 sheets in PDB entry 7OKC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 8first strand
Strand 2
A
25 26parallel
Strand 3
A
43 44parallel
Strand 4
A
61 62parallel
Strand 5
A
91 92parallel
Strand 6
A
116 117parallel
Strand 7
A
134 135parallel
Strand 8
A
152 153parallel
Strand 9
A
170 171parallel
Strand 10
A
185 188parallel
Strand 11
A
193 197anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 14first strand
Strand 2
A
31 32parallel
Strand 3
A
49 50parallel
Strand 4
A
67 70parallel
Strand 5
A
97 99parallel
Strand 6
A
122 123parallel
Strand 7
A
140 141parallel
Strand 8
A
158 159parallel
Strand 9
A
176 177parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 20first strand
Strand 2
A
36 38parallel
Strand 3
A
53 56parallel
Strand 4
A
83 86parallel
Strand 5
A
108 111parallel
Strand 6
A
128 129parallel
Strand 7
A
146 147parallel
Strand 8
A
164 165parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il