Analysis of interatomic Contacts of Structural Units in PDB entry:
7OKW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7OKW entry

There are 2 chains in PDB entry 7OKW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 431SER 527
B
 LYS 431SER 527
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 7OKW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
460 471Right-handed alpha
Helix 2
AA2
A
475 477Right-handed 310
Helix 3
AA3
A
478 492Right-handed alpha
Helix 4
AA4
B
460 471Right-handed alpha
Helix 5
AA5
B
475 477Right-handed 310
Helix 6
AA6
B
478 492Right-handed alpha
Helix 7
AA7
B
503 508Right-handed alpha
Helix 8
AA8
B
514 518Right-handed 310
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There is 1 sheet (AA1) in PDB entry 7OKW.

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
447 454first strand
Strand 2
A
434 441anti-parallel
Strand 3
A
521 526anti-parallel
Strand 4
A
496 502anti-parallel
Strand 5
B
496 502anti-parallel
Strand 6
B
521 526anti-parallel
Strand 7
B
434 441anti-parallel
Strand 8
B
447 454anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il