Analysis of interatomic Contacts of Structural Units in PDB entry:
7OLF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7OLF entry

There are 2 chains in PDB entry 7OLF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 387
B
 MET 1HIS 385
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 28 helices in PDB entry 7OLF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
34 38Right-handed 310
Helix 2
AA2
A
40 55Right-handed alpha
Helix 3
AA3
A
70 82Right-handed alpha
Helix 4
AA4
A
97 112Right-handed alpha
Helix 5
AA5
A
131 152Right-handed alpha
Helix 6
AA6
A
170 173Right-handed 310
Helix 7
AA7
A
189 200Right-handed alpha
Helix 8
AA8
A
209 227Right-handed alpha
Helix 9
AA9
A
244 257Right-handed alpha
Helix 10
AB1
A
301 307Right-handed 310
Helix 11
AB2
A
318 332Right-handed alpha
Helix 12
AB3
A
342 354Right-handed alpha
Helix 13
AB4
A
355 358Right-handed 310
Helix 14
AB5
A
362 368Right-handed alpha
Helix 15
AB6
B
34 38Right-handed 310
Helix 16
AB7
B
40 55Right-handed alpha
Helix 17
AB8
B
70 79Right-handed alpha
Helix 18
AB9
B
97 112Right-handed alpha
Helix 19
AC1
B
131 152Right-handed alpha
Helix 20
AC2
B
170 173Right-handed 310
Helix 21
AC3
B
189 200Right-handed alpha
Helix 22
AC4
B
209 227Right-handed alpha
Helix 23
AC5
B
244 257Right-handed alpha
Helix 24
AC6
B
301 305Right-handed 310
Helix 25
AC7
B
318 332Right-handed alpha
Helix 26
AC8
B
342 354Right-handed alpha
Helix 27
AC9
B
355 358Right-handed 310
Helix 28
AD1
B
362 368Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 7OLF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 183first strand
Strand 2
A
116 119parallel
Strand 3
A
86 90parallel
Strand 4
A
58 61parallel
Strand 5
A
15 19parallel
Strand 6
A
333 337parallel
Strand 7
A
232 236parallel
Strand 8
A
202 205parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 158first strand
Strand 2
A
163 168anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 242first strand
Strand 2
A
313 317parallel
Strand 3
A
299 300anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
182 183first strand
Strand 2
B
116 119parallel
Strand 3
B
86 90parallel
Strand 4
B
58 61parallel
Strand 5
B
15 19parallel
Strand 6
B
333 337parallel
Strand 7
B
232 236parallel
Strand 8
B
202 205parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
154 158first strand
Strand 2
B
163 168anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
238 242first strand
Strand 2
B
313 317parallel
Strand 3
B
299 300anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il