Analysis of interatomic Contacts of Structural Units in PDB entry:
7OM7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7OM7 entry

There are 12 chains in PDB entry 7OM7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 11	ILE 671
B	THR 11	ILE 671
C	THR 11	ILE 671
D	THR 11	ILE 671
E	A 3	U 8
F	C 1	U 8
G	A 3	U 8
H	C 1	U 8
I	C 1	U 8
J	A 2	U 8
K	C 1	U 8
L	A 3	U 8

There are116 helices in PDB entry 7OM7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	27	Right-handed alpha
Helix 2	AA2	A	29	38	Right-handed alpha
Helix 3	AA3	A	53	77	Right-handed alpha
Helix 4	AA4	A	130	139	Right-handed alpha
Helix 5	AA5	A	140	150	Right-handed alpha
Helix 6	AA6	A	157	170	Right-handed alpha
Helix 7	AA7	A	179	187	Right-handed alpha
Helix 8	AA8	A	190	194	Right-handed 310
Helix 9	AA9	A	200	207	Right-handed alpha
Helix 10	AB1	A	223	234	Right-handed alpha
Helix 11	AB2	A	234	245	Right-handed alpha
Helix 12	AB3	A	247	255	Right-handed alpha
Helix 13	AB4	A	256	260	Right-handed 310
Helix 14	AB5	A	273	275	Right-handed 310
Helix 15	AB6	A	286	304	Right-handed alpha
Helix 16	AB7	A	324	335	Right-handed alpha
Helix 17	AB8	A	372	377	Right-handed 310
Helix 18	AB9	A	378	397	Right-handed alpha
Helix 19	AC1	A	400	417	Right-handed alpha
Helix 20	AC2	A	442	464	Right-handed alpha
Helix 21	AC3	A	466	470	Right-handed 310
Helix 22	AC4	A	471	484	Right-handed alpha
Helix 23	AC5	A	533	543	Right-handed alpha
Helix 24	AC6	A	554	572	Right-handed alpha
Helix 25	AC7	A	573	575	Right-handed 310
Helix 26	AC8	A	576	590	Right-handed alpha
Helix 27	AC9	A	591	597	Right-handed alpha
Helix 28	AD1	A	630	639	Right-handed alpha
Helix 29	AD2	A	652	659	Right-handed alpha
Helix 30	AD3	B	15	27	Right-handed alpha
Helix 31	AD4	B	29	37	Right-handed alpha
Helix 32	AD5	B	53	77	Right-handed alpha
Helix 33	AD6	B	130	139	Right-handed alpha
Helix 34	AD7	B	140	150	Right-handed alpha
Helix 35	AD8	B	157	170	Right-handed alpha
Helix 36	AD9	B	179	187	Right-handed alpha
Helix 37	AE1	B	190	194	Right-handed 310
Helix 38	AE2	B	200	207	Right-handed alpha
Helix 39	AE3	B	223	234	Right-handed alpha
Helix 40	AE4	B	234	245	Right-handed alpha
Helix 41	AE5	B	247	255	Right-handed alpha
Helix 42	AE6	B	256	260	Right-handed 310
Helix 43	AE7	B	273	275	Right-handed 310
Helix 44	AE8	B	286	304	Right-handed alpha
Helix 45	AE9	B	324	335	Right-handed alpha
Helix 46	AF1	B	372	377	Right-handed 310
Helix 47	AF2	B	378	397	Right-handed alpha
Helix 48	AF3	B	400	417	Right-handed alpha
Helix 49	AF4	B	442	464	Right-handed alpha
Helix 50	AF5	B	466	470	Right-handed 310
Helix 51	AF6	B	471	484	Right-handed alpha
Helix 52	AF7	B	533	543	Right-handed alpha
Helix 53	AF8	B	553	572	Right-handed alpha
Helix 54	AF9	B	573	575	Right-handed 310
Helix 55	AG1	B	576	590	Right-handed alpha
Helix 56	AG2	B	591	597	Right-handed alpha
Helix 57	AG3	B	630	639	Right-handed alpha
Helix 58	AG4	B	652	659	Right-handed alpha
Helix 59	AG5	C	15	27	Right-handed alpha
Helix 60	AG6	C	29	38	Right-handed alpha
Helix 61	AG7	C	53	77	Right-handed alpha
Helix 62	AG8	C	130	139	Right-handed alpha
Helix 63	AG9	C	140	150	Right-handed alpha
Helix 64	AH1	C	157	170	Right-handed alpha
Helix 65	AH2	C	179	187	Right-handed alpha
Helix 66	AH3	C	190	194	Right-handed 310
Helix 67	AH4	C	200	207	Right-handed alpha
Helix 68	AH5	C	223	234	Right-handed alpha
Helix 69	AH6	C	234	245	Right-handed alpha
Helix 70	AH7	C	247	255	Right-handed alpha
Helix 71	AH8	C	256	260	Right-handed 310
Helix 72	AH9	C	273	275	Right-handed 310
Helix 73	AI1	C	286	304	Right-handed alpha
Helix 74	AI2	C	324	335	Right-handed alpha
Helix 75	AI3	C	372	377	Right-handed 310
Helix 76	AI4	C	378	397	Right-handed alpha
Helix 77	AI5	C	400	417	Right-handed alpha
Helix 78	AI6	C	442	464	Right-handed alpha
Helix 79	AI7	C	466	470	Right-handed 310
Helix 80	AI8	C	471	484	Right-handed alpha
Helix 81	AI9	C	533	543	Right-handed alpha
Helix 82	AJ1	C	553	572	Right-handed alpha
Helix 83	AJ2	C	573	575	Right-handed 310
Helix 84	AJ3	C	576	590	Right-handed alpha
Helix 85	AJ4	C	591	597	Right-handed alpha
Helix 86	AJ5	C	630	639	Right-handed alpha
Helix 87	AJ6	C	652	659	Right-handed alpha
Helix 88	AJ7	D	15	27	Right-handed alpha
Helix 89	AJ8	D	29	37	Right-handed alpha
Helix 90	AJ9	D	53	77	Right-handed alpha
Helix 91	AK1	D	129	139	Right-handed alpha
Helix 92	AK2	D	140	150	Right-handed alpha
Helix 93	AK3	D	157	170	Right-handed alpha
Helix 94	AK4	D	179	187	Right-handed alpha
Helix 95	AK5	D	190	194	Right-handed 310
Helix 96	AK6	D	200	207	Right-handed alpha
Helix 97	AK7	D	223	234	Right-handed alpha
Helix 98	AK8	D	234	245	Right-handed alpha
Helix 99	AK9	D	247	255	Right-handed alpha
Helix 100	AL1	D	256	260	Right-handed 310
Helix 101	AL2	D	273	275	Right-handed 310
Helix 102	AL3	D	286	304	Right-handed alpha
Helix 103	AL4	D	324	335	Right-handed alpha
Helix 104	AL5	D	372	377	Right-handed 310
Helix 105	AL6	D	378	397	Right-handed alpha
Helix 106	AL7	D	400	417	Right-handed alpha
Helix 107	AL8	D	442	465	Right-handed alpha
Helix 108	AL9	D	467	470	Right-handed 310
Helix 109	AM1	D	471	484	Right-handed alpha
Helix 110	AM2	D	533	543	Right-handed alpha
Helix 111	AM3	D	553	572	Right-handed alpha
Helix 112	AM4	D	573	575	Right-handed 310
Helix 113	AM5	D	576	590	Right-handed alpha
Helix 114	AM6	D	591	597	Right-handed alpha
Helix 115	AM7	D	630	639	Right-handed alpha
Helix 116	AM8	D	652	659	Right-handed alpha

There are 26 sheets in PDB entry 7OM7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	14	first strand
Strand 2	B	209	211	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	91	first strand
Strand 2	A	426	429	anti-parallel
Strand 3	A	420	421	anti-parallel
Strand 4	A	261	265	parallel
Strand 5	A	281	284	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	99	first strand
Strand 2	A	102	103	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	111	112	first strand
Strand 2	A	115	116	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	151	154	first strand
Strand 2	A	268	271	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	209	211	first strand
Strand 2	B	12	14	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	345	349	first strand
Strand 2	A	352	359	anti-parallel
Strand 3	A	362	366	anti-parallel
Strand 4	A	495	496	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	516	522	first strand
Strand 2	A	525	531	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	91	first strand
Strand 2	B	426	429	anti-parallel
Strand 3	B	420	421	anti-parallel
Strand 4	B	261	265	parallel
Strand 5	B	281	284	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	99	first strand
Strand 2	B	102	103	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	111	112	first strand
Strand 2	B	115	116	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	151	154	first strand
Strand 2	B	268	271	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	345	349	first strand
Strand 2	B	352	359	anti-parallel
Strand 3	B	362	366	anti-parallel
Strand 4	B	495	496	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	516	522	first strand
Strand 2	B	525	531	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	14	first strand
Strand 2	D	209	211	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	87	91	first strand
Strand 2	C	426	429	anti-parallel
Strand 3	C	420	421	anti-parallel
Strand 4	C	261	265	parallel
Strand 5	C	281	284	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	99	first strand
Strand 2	C	102	103	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	151	154	first strand
Strand 2	C	268	271	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	209	211	first strand
Strand 2	D	12	14	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	345	349	first strand
Strand 2	C	352	359	anti-parallel
Strand 3	C	362	366	anti-parallel
Strand 4	C	495	496	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	516	522	first strand
Strand 2	C	525	531	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	87	91	first strand
Strand 2	D	426	429	anti-parallel
Strand 3	D	420	421	anti-parallel
Strand 4	D	261	265	parallel
Strand 5	D	281	284	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	98	99	first strand
Strand 2	D	102	103	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	151	154	first strand
Strand 2	D	268	271	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	345	349	first strand
Strand 2	D	352	359	anti-parallel
Strand 3	D	362	366	anti-parallel
Strand 4	D	495	496	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	516	522	first strand
Strand 2	D	525	531	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7OM7

Analysis of interatomic Contacts of Structural Units in PDB entry:
7OM7