Analysis of interatomic Contacts of Structural Units in PDB entry:
7OM8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7OM8 entry

There are 3 chains in PDB entry 7OM8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
Y
 ASP 143SER 299
Z
 HIS 102VAL 250
B
 GLY 705ASN 937
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 7OM8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
Y
172 176Right-handed 310
Helix 2
AA2
Z
172 176Right-handed 310
Helix 3
AA3
B
821 826Right-handed 310
Helix 4
AA4
B
833 844Right-handed alpha
Helix 5
AA5
B
845 849Right-handed 310
Helix 6
AA6
B
860 870Right-handed alpha
Helix 7
AA7
B
920 922Right-handed 310
Helix 8
AA8
B
923 937Right-handed alpha
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There are 9 sheets in PDB entry 7OM8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
152 158first strand
Strand 2
Y
164 171anti-parallel
Strand 3
Y
178 185anti-parallel
Strand 4
Y
191 194anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
198 204first strand
Strand 2
Y
213 220anti-parallel
Strand 3
Y
227 230anti-parallel
Strand 4
Y
246 249anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
261 267first strand
Strand 2
Y
272 277anti-parallel
Strand 3
Y
282 286anti-parallel
Strand 4
Y
292 296anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Z
108 112first strand
Strand 2
Z
119 123anti-parallel
Strand 3
Z
126 130anti-parallel
Strand 4
Z
139 143anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Z
152 158first strand
Strand 2
Z
164 171anti-parallel
Strand 3
Z
178 185anti-parallel
Strand 4
Z
190 193anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Z
198 204first strand
Strand 2
Z
213 220anti-parallel
Strand 3
Z
227 230anti-parallel
Strand 4
Z
246 249anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
712 715first strand
Strand 2
B
723 732anti-parallel
Strand 3
B
735 744anti-parallel
Strand 4
B
781 789anti-parallel
Strand 5
B
765 766anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
754 757first strand
Strand 2
B
802 808anti-parallel
Strand 3
B
813 819anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
850 854first strand
Strand 2
B
912 918anti-parallel
Strand 3
B
898 905anti-parallel
Strand 4
B
884 892anti-parallel
Strand 5
B
874 881anti-parallel
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