Analysis of interatomic Contacts of Structural Units in PDB entry:
7OMD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7OMD entry

There are 2 chains in PDB entry 7OMD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2GLU 310
B
 THR 2GLN 311
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 7OMD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 14Right-handed 310
Helix 2
AA2
A
16 23Right-handed alpha
Helix 3
AA3
A
56 61Right-handed 310
Helix 4
AA4
A
63 67Right-handed 310
Helix 5
AA5
A
93 107Right-handed alpha
Helix 6
AA6
A
120 133Right-handed alpha
Helix 7
AA7
A
151 155Right-handed 310
Helix 8
AA8
A
158 168Right-handed alpha
Helix 9
AA9
A
168 177Right-handed alpha
Helix 10
AB1
A
179 184Right-handed alpha
Helix 11
AB2
A
184 189Right-handed alpha
Helix 12
AB3
A
195 204Right-handed alpha
Helix 13
AB4
A
205 207Right-handed 310
Helix 14
AB5
A
210 212Right-handed 310
Helix 15
AB6
A
213 222Right-handed alpha
Helix 16
AB7
A
230 246Right-handed alpha
Helix 17
AB8
A
262 271Right-handed alpha
Helix 18
AB9
A
286 290Right-handed 310
Helix 19
AC1
A
291 310Right-handed alpha
Helix 20
AC2
B
10 14Right-handed 310
Helix 21
AC3
B
16 23Right-handed alpha
Helix 22
AC4
B
56 61Right-handed 310
Helix 23
AC5
B
63 67Right-handed 310
Helix 24
AC6
B
93 106Right-handed alpha
Helix 25
AC7
B
120 133Right-handed alpha
Helix 26
AC8
B
158 168Right-handed alpha
Helix 27
AC9
B
168 177Right-handed alpha
Helix 28
AD1
B
179 184Right-handed alpha
Helix 29
AD2
B
184 189Right-handed alpha
Helix 30
AD3
B
195 204Right-handed alpha
Helix 31
AD4
B
205 207Right-handed 310
Helix 32
AD5
B
210 212Right-handed 310
Helix 33
AD6
B
213 219Right-handed alpha
Helix 34
AD7
B
220 223Right-handed 310
Helix 35
AD8
B
230 246Right-handed alpha
Helix 36
AD9
B
262 272Right-handed alpha
Helix 37
AE1
B
286 290Right-handed 310
Helix 38
AE2
B
291 310Right-handed alpha
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There are 2 sheets in PDB entry 7OMD. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 29first strand
Strand 2
A
32 38anti-parallel
Strand 3
A
72 76anti-parallel
Strand 4
A
46 50parallel
Strand 5
A
114 119parallel
Strand 6
A
137 143parallel
Strand 7
A
252 256parallel
Strand 8
A
276 280parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 29first strand
Strand 2
B
32 38anti-parallel
Strand 3
B
72 76anti-parallel
Strand 4
B
46 50parallel
Strand 5
B
114 119parallel
Strand 6
B
137 143parallel
Strand 7
B
252 256parallel
Strand 8
B
276 280parallel
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