Analysis of interatomic Contacts of Structural Units in PDB entry:
7OMM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7OMM entry

There are 4 chains in PDB entry 7OMM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 88	PRO 801
B	THR 31	ALA 158
C	VAL 5	THR 483
D	GLY 1	THR 489

There are 42 helices in PDB entry 7OMM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	555	560	Right-handed 310
Helix 2	AA2	B	41	43	Right-handed 310
Helix 3	AA3	B	44	54	Right-handed alpha
Helix 4	AA4	B	126	155	Right-handed alpha
Helix 5	AA5	C	31	35	Right-handed 310
Helix 6	AA6	C	90	94	Right-handed 310
Helix 7	AA7	C	133	149	Right-handed alpha
Helix 8	AA8	C	159	168	Right-handed alpha
Helix 9	AA9	C	183	190	Right-handed alpha
Helix 10	AB1	C	199	204	Right-handed alpha
Helix 11	AB2	C	207	214	Right-handed alpha
Helix 12	AB3	C	245	247	Right-handed 310
Helix 13	AB4	C	248	259	Right-handed alpha
Helix 14	AB5	C	270	281	Right-handed alpha
Helix 15	AB6	C	302	318	Right-handed alpha
Helix 16	AB7	C	326	336	Right-handed alpha
Helix 17	AB8	C	345	347	Right-handed 310
Helix 18	AB9	C	348	355	Right-handed alpha
Helix 19	AC1	C	390	400	Right-handed alpha
Helix 20	AC2	C	403	412	Right-handed alpha
Helix 21	AC3	C	421	429	Right-handed alpha
Helix 22	AC4	C	431	444	Right-handed alpha
Helix 23	AC5	C	452	470	Right-handed alpha
Helix 24	AC6	C	473	483	Right-handed alpha
Helix 25	AC7	D	90	94	Right-handed 310
Helix 26	AC8	D	140	155	Right-handed alpha
Helix 27	AC9	D	165	173	Right-handed alpha
Helix 28	AD1	D	174	177	Right-handed 310
Helix 29	AD2	D	186	197	Right-handed alpha
Helix 30	AD3	D	205	212	Right-handed alpha
Helix 31	AD4	D	213	221	Right-handed alpha
Helix 32	AD5	D	253	266	Right-handed alpha
Helix 33	AD6	D	280	287	Right-handed alpha
Helix 34	AD7	D	308	324	Right-handed alpha
Helix 35	AD8	D	332	343	Right-handed alpha
Helix 36	AD9	D	353	362	Right-handed alpha
Helix 37	AE1	D	396	405	Right-handed alpha
Helix 38	AE2	D	409	420	Right-handed alpha
Helix 39	AE3	D	427	437	Right-handed alpha
Helix 40	AE4	D	437	450	Right-handed alpha
Helix 41	AE5	D	456	476	Right-handed alpha
Helix 42	AE6	D	479	489	Right-handed alpha

There are 33 sheets in PDB entry 7OMM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	97	first strand
Strand 2	A	105	106	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	120	first strand
Strand 2	A	140	142	anti-parallel
Strand 3	A	148	149	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	168	169	first strand
Strand 2	A	179	181	anti-parallel
Strand 3	A	198	201	anti-parallel
Strand 4	A	210	214	anti-parallel
Strand 5	A	232	235	anti-parallel
Strand 6	A	238	239	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	217	218	first strand
Strand 2	A	227	228	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	263	264	first strand
Strand 2	A	272	273	anti-parallel
Strand 3	A	291	292	anti-parallel
Strand 4	A	298	299	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	276	277	first strand
Strand 2	A	287	288	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	305	307	first strand
Strand 2	A	312	314	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	317	320	first strand
Strand 2	A	331	336	anti-parallel
Strand 3	A	352	355	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	340	341	first strand
Strand 2	A	347	348	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	375	376	first strand
Strand 2	A	403	404	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	418	421	first strand
Strand 2	A	440	444	anti-parallel
Strand 3	A	452	457	anti-parallel
Strand 4	A	480	481	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	428	429	first strand
Strand 2	A	434	436	anti-parallel
Strand 3	A	460	461	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	465	466	first strand
Strand 2	A	471	476	anti-parallel
Strand 3	A	503	508	anti-parallel
Strand 4	A	533	534	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	511	513	first strand
Strand 2	A	523	529	anti-parallel
Strand 3	A	578	585	anti-parallel
Strand 4	A	592	595	anti-parallel
Strand 5	A	625	632	anti-parallel
Strand 6	A	638	645	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	511	513	first strand
Strand 2	A	523	529	anti-parallel
Strand 3	A	578	585	anti-parallel
Strand 4	A	598	600	anti-parallel
Strand 5	A	625	632	anti-parallel
Strand 6	A	638	645	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	656	658	first strand
Strand 2	A	671	680	anti-parallel
Strand 3	A	691	701	anti-parallel
Strand 4	A	709	718	anti-parallel
Strand 5	A	726	733	anti-parallel
Strand 6	A	742	750	anti-parallel
Strand 7	A	756	764	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	38	first strand
Strand 2	B	68	69	parallel
Strand 3	B	88	101	anti-parallel
Strand 4	B	73	82	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	38	first strand
Strand 2	B	68	69	parallel
Strand 3	B	88	101	anti-parallel
Strand 4	B	111	121	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	6	10	first strand
Strand 2	C	20	28	anti-parallel
Strand 3	C	81	87	anti-parallel
Strand 4	C	71	76	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	13	14	first strand
Strand 2	C	117	120	parallel
Strand 3	C	95	102	anti-parallel
Strand 4	C	37	42	anti-parallel
Strand 5	C	49	54	anti-parallel
Strand 6	C	61	63	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	13	14	first strand
Strand 2	C	117	120	parallel
Strand 3	C	95	102	anti-parallel
Strand 4	C	111	113	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	152	155	first strand
Strand 2	C	124	127	parallel
Strand 3	C	176	180	parallel
Strand 4	C	375	383	anti-parallel
Strand 5	C	223	228	anti-parallel
Strand 6	C	418	419	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	152	155	first strand
Strand 2	C	124	127	parallel
Strand 3	C	176	180	parallel
Strand 4	C	375	383	anti-parallel
Strand 5	C	445	446	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	215	216	first strand
Strand 2	C	219	220	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	262	264	first strand
Strand 2	C	339	344	parallel
Strand 3	C	231	235	anti-parallel
Strand 4	C	359	362	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	284	287	first strand
Strand 2	C	294	299	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	22	23	first strand
Strand 2	D	83	85	anti-parallel
Strand 3	D	72	74	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	39	42	first strand
Strand 2	D	95	99	anti-parallel
Strand 3	D	123	125	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	130	131	first strand
Strand 2	D	158	159	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	184	185	first strand
Strand 2	D	386	387	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	382	384	first strand
Strand 2	D	232	235	anti-parallel
Strand 3	D	424	425	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	347	350	first strand
Strand 2	D	237	241	anti-parallel
Strand 3	D	365	368	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	372	373	first strand
Strand 2	D	376	377	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7OMM

Analysis of interatomic Contacts of Structural Units in PDB entry:
7OMM