Analysis of interatomic Contacts of Structural Units in PDB entry:
7OMT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7OMT entry

There is 1 chain in PDB entry 7OMT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1THR 483
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 7OMT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
31 35Right-handed 310
Helix 2
AA2
A
90 94Right-handed 310
Helix 3
AA3
A
105 109Right-handed 310
Helix 4
AA4
A
133 149Right-handed alpha
Helix 5
AA5
A
159 169Right-handed alpha
Helix 6
AA6
A
183 190Right-handed alpha
Helix 7
AA7
A
199 204Right-handed alpha
Helix 8
AA8
A
207 214Right-handed alpha
Helix 9
AA9
A
245 247Right-handed 310
Helix 10
AB1
A
248 258Right-handed alpha
Helix 11
AB2
A
270 281Right-handed alpha
Helix 12
AB3
A
302 318Right-handed alpha
Helix 13
AB4
A
326 336Right-handed alpha
Helix 14
AB5
A
345 347Right-handed 310
Helix 15
AB6
A
348 356Right-handed alpha
Helix 16
AB7
A
389 400Right-handed alpha
Helix 17
AB8
A
403 412Right-handed alpha
Helix 18
AB9
A
421 430Right-handed alpha
Helix 19
AC1
A
431 444Right-handed alpha
Helix 20
AC2
A
452 470Right-handed alpha
Helix 21
AC3
A
473 483Right-handed alpha
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There are 9 sheets in PDB entry 7OMT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 10first strand
Strand 2
A
21 28anti-parallel
Strand 3
A
81 86anti-parallel
Strand 4
A
71 76anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 14first strand
Strand 2
A
117 120parallel
Strand 3
A
95 104anti-parallel
Strand 4
A
37 42anti-parallel
Strand 5
A
49 54anti-parallel
Strand 6
A
61 63anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 14first strand
Strand 2
A
117 120parallel
Strand 3
A
95 104anti-parallel
Strand 4
A
110 113anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 155first strand
Strand 2
A
124 127parallel
Strand 3
A
176 180parallel
Strand 4
A
375 383anti-parallel
Strand 5
A
223 228anti-parallel
Strand 6
A
418 419anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 155first strand
Strand 2
A
124 127parallel
Strand 3
A
176 180parallel
Strand 4
A
375 383anti-parallel
Strand 5
A
445 446parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 216first strand
Strand 2
A
219 220anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 264first strand
Strand 2
A
339 344parallel
Strand 3
A
231 235anti-parallel
Strand 4
A
359 362anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
286 289first strand
Strand 2
A
292 298anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
366 367first strand
Strand 2
A
370 371anti-parallel
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