Analysis of interatomic Contacts of Structural Units in PDB entry:
7OO0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7OO0 entry

There are 7 chains in PDB entry 7OO0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 19	VAL 280
B	ALA 19	VAL 280
C	ALA 19	VAL 280
D	ALA 19	VAL 280
E	ALA 19	VAL 280
F	ALA 19	VAL 280
G	ALA 19	VAL 280

There are 42 helices in PDB entry 7OO0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	20	59	Right-handed alpha
Helix 2	AA2	A	62	89	Right-handed alpha
Helix 3	AA3	A	92	128	Right-handed alpha
Helix 4	AA4	A	167	173	Right-handed alpha
Helix 5	AA5	A	197	211	Right-handed alpha
Helix 6	AA6	A	245	265	Right-handed alpha
Helix 7	AA7	B	20	59	Right-handed alpha
Helix 8	AA8	B	62	89	Right-handed alpha
Helix 9	AA9	B	92	128	Right-handed alpha
Helix 10	AB1	B	167	173	Right-handed alpha
Helix 11	AB2	B	197	211	Right-handed alpha
Helix 12	AB3	B	245	265	Right-handed alpha
Helix 13	AB4	C	20	59	Right-handed alpha
Helix 14	AB5	C	62	89	Right-handed alpha
Helix 15	AB6	C	92	128	Right-handed alpha
Helix 16	AB7	C	167	173	Right-handed alpha
Helix 17	AB8	C	197	211	Right-handed alpha
Helix 18	AB9	C	245	265	Right-handed alpha
Helix 19	AC1	D	20	59	Right-handed alpha
Helix 20	AC2	D	62	89	Right-handed alpha
Helix 21	AC3	D	92	128	Right-handed alpha
Helix 22	AC4	D	167	173	Right-handed alpha
Helix 23	AC5	D	197	211	Right-handed alpha
Helix 24	AC6	D	245	265	Right-handed alpha
Helix 25	AC7	E	20	59	Right-handed alpha
Helix 26	AC8	E	62	89	Right-handed alpha
Helix 27	AC9	E	92	128	Right-handed alpha
Helix 28	AD1	E	167	173	Right-handed alpha
Helix 29	AD2	E	197	211	Right-handed alpha
Helix 30	AD3	E	245	265	Right-handed alpha
Helix 31	AD4	F	20	59	Right-handed alpha
Helix 32	AD5	F	62	89	Right-handed alpha
Helix 33	AD6	F	92	128	Right-handed alpha
Helix 34	AD7	F	167	173	Right-handed alpha
Helix 35	AD8	F	197	211	Right-handed alpha
Helix 36	AD9	F	245	265	Right-handed alpha
Helix 37	AE1	G	20	59	Right-handed alpha
Helix 38	AE2	G	62	89	Right-handed alpha
Helix 39	AE3	G	92	128	Right-handed alpha
Helix 40	AE4	G	167	173	Right-handed alpha
Helix 41	AE5	G	197	211	Right-handed alpha
Helix 42	AE6	G	245	265	Right-handed alpha

There are 15 sheets in PDB entry 7OO0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	162	166	first strand
Strand 2	A	152	156	anti-parallel
Strand 3	A	141	148	anti-parallel
Strand 4	A	135	138	anti-parallel
Strand 5	A	176	177	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	183	192	first strand
Strand 2	A	233	242	anti-parallel
Strand 3	A	221	228	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	274	279	first strand
Strand 2	B	274	279	parallel
Strand 3	C	274	279	parallel
Strand 4	D	274	279	parallel
Strand 5	E	274	279	parallel
Strand 6	F	274	279	parallel
Strand 7	G	274	279	parallel
Strand 8	A	274	279	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	162	166	first strand
Strand 2	B	152	156	anti-parallel
Strand 3	B	141	148	anti-parallel
Strand 4	B	135	138	anti-parallel
Strand 5	B	176	177	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	183	192	first strand
Strand 2	B	233	242	anti-parallel
Strand 3	B	221	228	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	162	166	first strand
Strand 2	C	152	156	anti-parallel
Strand 3	C	141	148	anti-parallel
Strand 4	C	135	138	anti-parallel
Strand 5	C	176	177	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	183	192	first strand
Strand 2	C	233	242	anti-parallel
Strand 3	C	221	228	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	162	166	first strand
Strand 2	D	152	156	anti-parallel
Strand 3	D	141	148	anti-parallel
Strand 4	D	135	138	anti-parallel
Strand 5	D	176	177	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	183	192	first strand
Strand 2	D	233	242	anti-parallel
Strand 3	D	221	228	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	162	166	first strand
Strand 2	E	152	156	anti-parallel
Strand 3	E	141	148	anti-parallel
Strand 4	E	135	138	anti-parallel
Strand 5	E	176	177	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	183	192	first strand
Strand 2	E	233	242	anti-parallel
Strand 3	E	221	228	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	162	166	first strand
Strand 2	F	152	156	anti-parallel
Strand 3	F	141	148	anti-parallel
Strand 4	F	135	138	anti-parallel
Strand 5	F	176	177	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	183	192	first strand
Strand 2	F	233	242	anti-parallel
Strand 3	F	221	228	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	162	166	first strand
Strand 2	G	152	156	anti-parallel
Strand 3	G	141	148	anti-parallel
Strand 4	G	135	138	anti-parallel
Strand 5	G	176	177	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	183	192	first strand
Strand 2	G	233	242	anti-parallel
Strand 3	G	221	228	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7OO0

Analysis of interatomic Contacts of Structural Units in PDB entry:
7OO0