Analysis of interatomic Contacts of Structural Units in PDB entry:
7OO1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7OO1 entry

There are 2 chains in PDB entry 7OO1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 474
B
 MET 1LEU 477
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 38 helices in PDB entry 7OO1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 29Right-handed alpha
Helix 2
AA2
A
42 61Right-handed alpha
Helix 3
AA3
A
111 115Right-handed 310
Helix 4
AA4
A
172 186Right-handed alpha
Helix 5
AA5
A
198 209Right-handed alpha
Helix 6
AA6
A
220 226Right-handed alpha
Helix 7
AA7
A
226 234Right-handed alpha
Helix 8
AA8
A
241 248Right-handed alpha
Helix 9
AA9
A
249 251Right-handed 310
Helix 10
AB1
A
252 268Right-handed alpha
Helix 11
AB2
A
278 283Right-handed 310
Helix 12
AB3
A
288 301Right-handed alpha
Helix 13
AB4
A
309 314Right-handed alpha
Helix 14
AB5
A
317 335Right-handed alpha
Helix 15
AB6
A
335 346Right-handed alpha
Helix 16
AB7
A
352 368Right-handed alpha
Helix 17
AB8
A
380 389Right-handed alpha
Helix 18
AB9
A
401 408Right-handed alpha
Helix 19
AC1
A
424 439Right-handed alpha
Helix 20
AC2
B
19 29Right-handed alpha
Helix 21
AC3
B
42 61Right-handed alpha
Helix 22
AC4
B
111 118Right-handed alpha
Helix 23
AC5
B
172 186Right-handed alpha
Helix 24
AC6
B
198 209Right-handed alpha
Helix 25
AC7
B
220 226Right-handed alpha
Helix 26
AC8
B
226 234Right-handed alpha
Helix 27
AC9
B
241 248Right-handed alpha
Helix 28
AD1
B
249 251Right-handed 310
Helix 29
AD2
B
252 268Right-handed alpha
Helix 30
AD3
B
279 283Right-handed 310
Helix 31
AD4
B
288 301Right-handed alpha
Helix 32
AD5
B
309 314Right-handed alpha
Helix 33
AD6
B
317 335Right-handed alpha
Helix 34
AD7
B
335 346Right-handed alpha
Helix 35
AD8
B
352 368Right-handed alpha
Helix 36
AD9
B
380 389Right-handed alpha
Helix 37
AE1
B
401 408Right-handed alpha
Helix 38
AE2
B
424 439Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 7OO1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 13first strand
Strand 2
A
33 37parallel
Strand 3
A
66 69parallel
Strand 4
A
189 195parallel
Strand 5
A
213 218parallel
Strand 6
A
236 240parallel
Strand 7
A
271 274parallel
Strand 8
A
305 308parallel
Strand 9
A
8 13parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 87first strand
Strand 2
A
151 154anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 108first strand
Strand 2
A
92 96parallel
Strand 3
A
142 147anti-parallel
Strand 4
A
131 138anti-parallel
Strand 5
A
123 126anti-parallel
Strand 6
A
159 160anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
370 373first strand
Strand 2
A
447 452parallel
Strand 3
A
464 469anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
395 399first strand
Strand 2
A
414 418parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 12first strand
Strand 2
B
31 37parallel
Strand 3
B
65 69parallel
Strand 4
B
189 192parallel
Strand 5
B
213 218parallel
Strand 6
B
236 240parallel
Strand 7
B
271 274parallel
Strand 8
B
305 308parallel
Strand 9
B
8 12parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
106 108first strand
Strand 2
B
92 96parallel
Strand 3
B
142 149anti-parallel
Strand 4
B
131 138anti-parallel
Strand 5
B
123 126anti-parallel
Strand 6
B
159 160anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
414 418first strand
Strand 2
B
395 399parallel
Strand 3
B
370 376parallel
Strand 4
B
446 453parallel
Strand 5
B
462 470anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il