Analysis of interatomic Contacts of Structural Units in PDB entry:
7OOC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7OOC entry

There are 21 chains in PDB entry 7OOC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	GLN 3	ARG 217
D	PHE 66	GLU 218
F	ARG 2	TRP 155
A	SER 19	GLN 267
H	GLN 4	LYS 131
J	ASN 8	ARG 121
C	MET 1	LEU 203
S	ASN 3	THR 79
O	MET 1	LYS 87
K	ALA 2	ALA 137
M	ALA 2	TRP 61
I	VAL 7	SER 107
L	LEU 5	GLU 122
N	GLN 2	LEU 84
R	ARG 3	ASN 86
T	GLU 5	ARG 57
G	ILE 2	TRP 142
Q	TYR 40	ASP 104
E	MET 1	ASP 167
P	LYS 2	ALA 84
5	U 5	A 1509

There are 83 helices in PDB entry 7OOC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	6	11	Right-handed alpha
Helix 2	AA2	B	29	48	Right-handed alpha
Helix 3	AA3	B	73	79	Right-handed alpha
Helix 4	AA4	B	82	97	Right-handed alpha
Helix 5	AA5	B	111	114	Right-handed 310
Helix 6	AA6	B	115	129	Right-handed alpha
Helix 7	AA7	B	132	147	Right-handed alpha
Helix 8	AA8	D	110	125	Right-handed alpha
Helix 9	AA9	D	163	173	Right-handed alpha
Helix 10	AB1	D	187	201	Right-handed alpha
Helix 11	AB2	D	204	211	Right-handed alpha
Helix 12	AB3	F	19	29	Right-handed alpha
Helix 13	AB4	F	34	52	Right-handed alpha
Helix 14	AB5	F	56	69	Right-handed alpha
Helix 15	AB6	F	91	108	Right-handed alpha
Helix 16	AB7	F	114	128	Right-handed alpha
Helix 17	AB8	F	133	144	Right-handed alpha
Helix 18	AB9	F	147	153	Right-handed alpha
Helix 19	AC1	A	38	42	Right-handed 310
Helix 20	AC2	A	57	78	Right-handed alpha
Helix 21	AC3	A	90	103	Right-handed alpha
Helix 22	AC4	A	120	140	Right-handed alpha
Helix 23	AC5	A	145	164	Right-handed alpha
Helix 24	AC6	A	184	194	Right-handed alpha
Helix 25	AC7	A	221	239	Right-handed alpha
Helix 26	AC8	H	36	41	Right-handed alpha
Helix 27	AC9	H	45	50	Right-handed alpha
Helix 28	AD1	H	51	56	Right-handed alpha
Helix 29	AD2	H	74	93	Right-handed alpha
Helix 30	AD3	H	96	103	Right-handed alpha
Helix 31	AD4	J	46	51	Right-handed 310
Helix 32	AD5	J	52	69	Right-handed alpha
Helix 33	AD6	J	83	86	Right-handed 310
Helix 34	AD7	J	87	96	Right-handed alpha
Helix 35	AD8	C	7	15	Right-handed alpha
Helix 36	AD9	C	48	62	Right-handed alpha
Helix 37	AE1	C	67	79	Right-handed alpha
Helix 38	AE2	C	84	95	Right-handed alpha
Helix 39	AE3	C	96	105	Right-handed alpha
Helix 40	AE4	C	109	120	Right-handed alpha
Helix 41	AE5	C	153	160	Right-handed alpha
Helix 42	AE6	C	183	187	Right-handed 310
Helix 43	AE7	C	192	200	Right-handed alpha
Helix 44	AE8	S	7	38	Right-handed alpha
Helix 45	AE9	S	40	56	Right-handed alpha
Helix 46	AF1	S	61	77	Right-handed alpha
Helix 47	AF2	O	53	61	Right-handed alpha
Helix 48	AF3	O	66	75	Right-handed alpha
Helix 49	AF4	O	77	87	Right-handed alpha
Helix 50	AF5	K	3	8	Right-handed alpha
Helix 51	AF6	M	3	12	Right-handed alpha
Helix 52	AF7	M	40	51	Right-handed alpha
Helix 53	AF8	I	21	35	Right-handed alpha
Helix 54	AF9	I	87	94	Right-handed alpha
Helix 55	AG1	L	14	19	Right-handed alpha
Helix 56	AG2	L	26	38	Right-handed alpha
Helix 57	AG3	L	49	51	Right-handed 310
Helix 58	AG4	L	52	63	Right-handed alpha
Helix 59	AG5	L	67	83	Right-handed alpha
Helix 60	AG6	L	85	93	Right-handed alpha
Helix 61	AG7	N	4	13	Right-handed alpha
Helix 62	AG8	N	21	43	Right-handed alpha
Helix 63	AG9	N	46	71	Right-handed alpha
Helix 64	AH1	N	72	76	Right-handed 310
Helix 65	AH2	N	77	81	Right-handed 310
Helix 66	AH3	R	15	24	Right-handed alpha
Helix 67	AH4	R	41	45	Right-handed 310
Helix 68	AH5	R	70	75	Right-handed 310
Helix 69	AH6	T	12	30	Right-handed alpha
Helix 70	AH7	T	37	56	Right-handed alpha
Helix 71	AH8	G	13	28	Right-handed alpha
Helix 72	AH9	G	38	51	Right-handed alpha
Helix 73	AI1	G	100	104	Right-handed 310
Helix 74	AI2	G	124	132	Right-handed alpha
Helix 75	AI3	Q	41	47	Right-handed alpha
Helix 76	AI4	Q	52	55	Right-handed 310
Helix 77	AI5	Q	56	64	Right-handed alpha
Helix 78	AI6	Q	72	77	Right-handed alpha
Helix 79	AI7	Q	79	96	Right-handed alpha
Helix 80	AI8	E	15	29	Right-handed alpha
Helix 81	AI9	E	65	68	Right-handed 310
Helix 82	AJ1	E	69	79	Right-handed alpha
Helix 83	AJ2	E	103	114	Right-handed alpha

There are 21 sheets in PDB entry 7OOC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	22	first strand
Strand 2	B	53	60	parallel
Strand 3	B	68	71	anti-parallel
Strand 4	B	105	108	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	172	first strand
Strand 2	B	152	157	anti-parallel
Strand 3	B	197	206	anti-parallel
Strand 4	B	185	194	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	69	70	first strand
Strand 2	D	89	95	anti-parallel
Strand 3	D	100	107	anti-parallel
Strand 4	D	127	128	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	77	79	first strand
Strand 2	D	84	86	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	140	142	first strand
Strand 2	D	149	152	anti-parallel
Strand 3	D	179	182	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	72	76	first strand
Strand 2	F	85	89	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	106	108	first strand
Strand 2	A	82	85	parallel
Strand 3	A	175	178	parallel
Strand 4	A	198	200	parallel
Strand 5	A	213	214	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	9	10	first strand
Strand 2	H	17	18	anti-parallel
Strand 3	H	68	69	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	34	39	first strand
Strand 2	J	23	28	anti-parallel
Strand 3	J	12	18	anti-parallel
Strand 4	J	75	80	parallel
Strand 5	J	104	105	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	127	128	first strand
Strand 2	C	123	124	anti-parallel
Strand 3	C	141	143	anti-parallel
Strand 4	C	175	177	anti-parallel
Strand 5	C	168	170	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	3	5	first strand
Strand 2	O	20	22	anti-parallel
Strand 3	O	34	35	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	44	53	first strand
Strand 2	K	63	70	anti-parallel
Strand 3	K	75	79	anti-parallel
Strand 4	K	108	110	parallel
Strand 5	K	92	97	anti-parallel
Strand 6	K	44	53	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	76	82	first strand
Strand 2	I	12	18	anti-parallel
Strand 3	I	103	105	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	53	58	first strand
Strand 2	I	68	73	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	48	52	first strand
Strand 2	R	57	61	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	32	36	first strand
Strand 2	G	68	74	anti-parallel
Strand 3	G	54	61	anti-parallel
Strand 4	E	148	149	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	86	89	first strand
Strand 2	G	139	142	anti-parallel
Strand 3	G	113	114	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	98	99	first strand
Strand 2	G	135	136	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	42	44	first strand
Strand 2	E	54	60	anti-parallel
Strand 3	E	3	8	anti-parallel
Strand 4	E	85	89	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	38	48	first strand
Strand 2	P	21	31	anti-parallel
Strand 3	P	11	13	anti-parallel
Strand 4	P	60	61	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	64	70	first strand
Strand 2	P	73	76	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7OOC

Analysis of interatomic Contacts of Structural Units in PDB entry:
7OOC