Analysis of interatomic Contacts of Structural Units in PDB entry:
7OOD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7OOD entry

There are 31 chains in PDB entry 7OOD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
3	A 8	U 2900
4	U 1	C 108
w	THR 2	SER 109
a	PRO 2	GLN 286
c	ALA 2	PHE 211
e	LYS 3	LYS 178
k	LEU 3	GLU 150
i	LYS 3	SER 146
m	SER 2	ASP 120
q	MET 1	HIS 99
u	SER 17	LEU 102
y	ALA 2	TYR 57
0	MET 1	GLU 47
2	MET 1	GLY 37
1	MET 1	ILE 59
o	LYS 3	ARG 117
s	ASP 2	VAL 93
v	ALA 2	LEU 64
x	PHE 5	GLY 48
z	ALA 2	LYS 51
d	ASN 3	LEU 177
b	MET 1	ALA 229
l	MET 1	GLU 136
p	MET 1	SER 114
j	MET 1	VAL 122
n	MET 1	PHE 116
t	MET 1	LEU 111
r	MET 1	ARG 139
f	MET 1	ASP 145
h	ILE 9	ILE 136
g	ALA 3	ALA 127

There are 94 helices in PDB entry 7OOD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	w	3	8	Right-handed alpha
Helix 2	AA2	w	13	35	Right-handed alpha
Helix 3	AA3	w	42	61	Right-handed alpha
Helix 4	AA4	w	82	109	Right-handed alpha
Helix 5	AA5	a	34	36	Right-handed 310
Helix 6	AA6	a	139	141	Right-handed 310
Helix 7	AA7	a	205	209	Right-handed 310
Helix 8	AA8	a	215	222	Right-handed alpha
Helix 9	AA9	a	272	276	Right-handed 310
Helix 10	AB1	c	31	43	Right-handed alpha
Helix 11	AB2	c	104	120	Right-handed alpha
Helix 12	AB3	c	130	134	Right-handed 310
Helix 13	AB4	c	140	150	Right-handed alpha
Helix 14	AB5	c	165	171	Right-handed alpha
Helix 15	AB6	c	184	186	Right-handed 310
Helix 16	AB7	c	187	193	Right-handed alpha
Helix 17	AB8	c	202	211	Right-handed alpha
Helix 18	AB9	e	61	85	Right-handed alpha
Helix 19	AC1	e	140	153	Right-handed alpha
Helix 20	AC2	k	4	8	Right-handed 310
Helix 21	AC3	k	57	62	Right-handed alpha
Helix 22	AC4	k	82	86	Right-handed alpha
Helix 23	AC5	k	94	99	Right-handed alpha
Helix 24	AC6	k	132	142	Right-handed alpha
Helix 25	AC7	i	27	41	Right-handed alpha
Helix 26	AC8	i	61	65	Right-handed 310
Helix 27	AC9	i	68	74	Right-handed 310
Helix 28	AD1	i	92	96	Right-handed alpha
Helix 29	AD2	i	100	110	Right-handed alpha
Helix 30	AD3	i	117	122	Right-handed alpha
Helix 31	AD4	i	135	139	Right-handed 310
Helix 32	AD5	m	10	29	Right-handed alpha
Helix 33	AD6	m	35	52	Right-handed alpha
Helix 34	AD7	m	56	65	Right-handed alpha
Helix 35	AD8	m	74	90	Right-handed alpha
Helix 36	AD9	y	9	17	Right-handed alpha
Helix 37	AE1	y	18	21	Right-handed 310
Helix 38	AE2	0	8	17	Right-handed alpha
Helix 39	AE3	0	17	22	Right-handed alpha
Helix 40	AE4	0	24	38	Right-handed alpha
Helix 41	AE5	2	29	32	Right-handed 310
Helix 42	AE6	1	4	9	Right-handed alpha
Helix 43	AE7	1	34	43	Right-handed alpha
Helix 44	AE8	1	48	57	Right-handed alpha
Helix 45	AE9	o	8	15	Right-handed alpha
Helix 46	AF1	o	101	107	Right-handed 310
Helix 47	AF2	s	13	21	Right-handed alpha
Helix 48	AF3	s	36	48	Right-handed alpha
Helix 49	AF4	v	19	23	Right-handed 310
Helix 50	AF5	v	52	61	Right-handed alpha
Helix 51	AF6	d	4	20	Right-handed alpha
Helix 52	AF7	d	50	61	Right-handed alpha
Helix 53	AF8	d	92	105	Right-handed alpha
Helix 54	AF9	d	107	111	Right-handed 310
Helix 55	AG1	d	134	138	Right-handed 310
Helix 56	AG2	d	162	173	Right-handed alpha
Helix 57	AG3	b	41	46	Right-handed alpha
Helix 58	AG4	b	63	74	Right-handed alpha
Helix 59	AG5	b	97	101	Right-handed 310
Helix 60	AG6	b	121	126	Right-handed alpha
Helix 61	AG7	l	44	59	Right-handed alpha
Helix 62	AG8	l	110	123	Right-handed alpha
Helix 63	AG9	p	6	20	Right-handed alpha
Helix 64	AH1	p	24	29	Right-handed 310
Helix 65	AH2	p	30	69	Right-handed alpha
Helix 66	AH3	p	74	79	Right-handed alpha
Helix 67	AH4	p	79	84	Right-handed alpha
Helix 68	AH5	p	93	101	Right-handed alpha
Helix 69	AH6	p	104	112	Right-handed alpha
Helix 70	AH7	j	105	107	Right-handed 310
Helix 71	AH8	j	111	118	Right-handed alpha
Helix 72	AH9	n	5	23	Right-handed alpha
Helix 73	AI1	n	71	83	Right-handed alpha
Helix 74	AI2	n	100	111	Right-handed alpha
Helix 75	AI3	r	13	25	Right-handed alpha
Helix 76	AI4	r	29	39	Right-handed alpha
Helix 77	AI5	r	41	61	Right-handed alpha
Helix 78	AI6	r	114	135	Right-handed alpha
Helix 79	AI7	f	44	74	Right-handed alpha
Helix 80	AI8	f	93	102	Right-handed alpha
Helix 81	AI9	f	103	105	Right-handed 310
Helix 82	AJ1	h	25	29	Right-handed 310
Helix 83	AJ2	h	31	40	Right-handed alpha
Helix 84	AJ3	h	41	47	Right-handed 310
Helix 85	AJ4	h	73	81	Right-handed alpha
Helix 86	AJ5	h	98	108	Right-handed alpha
Helix 87	AJ6	h	116	129	Right-handed alpha
Helix 88	AJ7	h	130	132	Right-handed 310
Helix 89	AJ8	g	4	19	Right-handed alpha
Helix 90	AJ9	g	33	44	Right-handed alpha
Helix 91	AK1	g	55	66	Right-handed alpha
Helix 92	AK2	g	72	76	Right-handed 310
Helix 93	AK3	g	89	103	Right-handed alpha
Helix 94	AK4	g	121	127	Right-handed alpha

There are 53 sheets in PDB entry 7OOD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	3	5	first strand
Strand 2	a	18	20	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	38	40	first strand
Strand 2	a	65	67	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	83	87	first strand
Strand 2	a	96	101	anti-parallel
Strand 3	a	105	110	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	136	137	first strand
Strand 2	a	197	200	anti-parallel
Strand 3	a	147	148	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	169	173	first strand
Strand 2	a	180	183	anti-parallel
Strand 3	a	189	192	anti-parallel
Strand 4	a	278	280	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	127	128	first strand
Strand 2	c	197	200	parallel
Strand 3	c	158	161	parallel
Strand 4	c	179	182	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	17	20	first strand
Strand 2	e	24	28	anti-parallel
Strand 3	e	34	37	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	44	49	first strand
Strand 2	e	52	57	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	125	127	first strand
Strand 2	e	133	138	anti-parallel
Strand 3	e	86	93	anti-parallel
Strand 4	e	164	167	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	98	102	first strand
Strand 2	e	105	109	anti-parallel
Strand 3	e	116	119	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	k	78	81	first strand
Strand 2	k	112	115	parallel
Strand 3	k	130	131	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	k	125	128	first strand
Strand 2	k	145	148	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	i	21	22	first strand
Strand 2	i	57	60	parallel
Strand 3	i	125	127	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	i	76	80	first strand
Strand 2	i	87	91	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	m	30	34	first strand
Strand 2	m	112	117	anti-parallel
Strand 3	m	99	105	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	q	10	14	first strand
Strand 2	q	3	7	anti-parallel
Strand 3	q	38	39	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	q	19	23	first strand
Strand 2	q	88	97	anti-parallel
Strand 3	q	55	64	anti-parallel
Strand 4	q	32	35	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	q	68	72	first strand
Strand 2	q	81	85	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	u	36	37	first strand
Strand 2	u	50	53	anti-parallel
Strand 3	u	72	75	anti-parallel
Strand 4	u	65	68	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	u	44	45	first strand
Strand 2	u	79	86	anti-parallel
Strand 3	u	92	98	anti-parallel
Strand 4	u	59	61	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	y	27	29	first strand
Strand 2	y	36	38	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	y	47	48	first strand
Strand 2	y	51	52	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	2	3	first strand
Strand 2	2	34	35	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	15	19	first strand
Strand 2	2	22	26	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	20	21	first strand
Strand 2	1	45	46	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	o	44	46	first strand
Strand 2	o	29	37	anti-parallel
Strand 3	o	86	93	anti-parallel

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There are 7 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	o	44	46	first strand
Strand 2	o	29	37	anti-parallel
Strand 3	o	49	52	anti-parallel
Strand 4	o	63	70	anti-parallel
Strand 5	o	73	80	anti-parallel
Strand 6	j	76	79	anti-parallel
Strand 7	j	69	70	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	s	27	31	first strand
Strand 2	s	78	83	anti-parallel
Strand 3	s	55	60	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	s	64	65	first strand
Strand 2	s	73	74	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	v	13	16	first strand
Strand 2	v	26	29	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	v	33	34	first strand
Strand 2	v	50	51	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	v	37	40	first strand
Strand 2	v	43	47	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	x	9	10	first strand
Strand 2	x	27	28	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	x	14	16	first strand
Strand 2	x	34	36	parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	z	19	22	first strand
Strand 2	z	6	11	anti-parallel
Strand 3	z	43	50	anti-parallel
Strand 4	z	33	38	anti-parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	66	68	first strand
Strand 2	d	85	91	anti-parallel
Strand 3	d	31	37	anti-parallel
Strand 4	d	152	158	anti-parallel
Strand 5	d	127	132	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	73	74	first strand
Strand 2	d	79	80	anti-parallel

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There are 7 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	5	18	first strand
Strand 2	b	22	30	anti-parallel
Strand 3	b	190	194	anti-parallel
Strand 4	b	173	185	anti-parallel
Strand 5	b	107	113	anti-parallel
Strand 6	b	204	209	anti-parallel
Strand 7	b	5	18	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	78	85	first strand
Strand 2	b	49	56	anti-parallel
Strand 3	b	34	40	anti-parallel
Strand 4	b	95	96	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	119	120	first strand
Strand 2	b	167	168	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	l	63	66	first strand
Strand 2	l	104	107	anti-parallel
Strand 3	l	32	36	anti-parallel
Strand 4	l	129	133	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	l	40	43	first strand
Strand 2	l	94	97	anti-parallel

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There are 7 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	j	92	93	first strand
Strand 2	j	83	88	anti-parallel
Strand 3	j	57	64	anti-parallel
Strand 4	j	38	45	anti-parallel
Strand 5	j	18	24	anti-parallel
Strand 6	j	7	10	anti-parallel
Strand 7	j	83	88	parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	j	102	103	first strand
Strand 2	j	121	122	parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	n	50	56	first strand
Strand 2	n	39	45	anti-parallel
Strand 3	n	28	34	anti-parallel
Strand 4	n	89	92	parallel

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There are 5 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	t	69	70	first strand
Strand 2	t	33	37	anti-parallel
Strand 3	t	22	28	anti-parallel
Strand 4	t	9	12	anti-parallel
Strand 5	t	74	76	anti-parallel

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There are 3 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	r	5	10	first strand
Strand 2	r	101	108	anti-parallel
Strand 3	r	70	78	anti-parallel

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There are 2 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	r	82	86	first strand
Strand 2	r	94	98	anti-parallel

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There are 4 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	77	81	first strand
Strand 2	f	134	144	parallel
Strand 3	f	122	131	anti-parallel
Strand 4	f	113	114	anti-parallel

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There are 2 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	83	84	first strand
Strand 2	f	87	88	anti-parallel

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There are 2 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	53	55	first strand
Strand 2	h	65	67	anti-parallel

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There are 2 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	95	97	first strand
Strand 2	h	134	136	parallel

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There are 5 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	49	53	first strand
Strand 2	g	81	85	anti-parallel
Strand 3	g	23	27	anti-parallel
Strand 4	g	108	113	anti-parallel
Strand 5	g	116	119	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7OOD

Analysis of interatomic Contacts of Structural Units in PDB entry:
7OOD