Analysis of interatomic Contacts of Structural Units in PDB entry:
7OOK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7OOK entry

There are 3 chains in PDB entry 7OOK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	GLN 12	THR 384
B	GLN 12	THR 384
A	GLN 12	THR 384

There are 18 helices in PDB entry 7OOK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	12	35	Right-handed alpha
Helix 2	AA2	C	90	94	Right-handed 310
Helix 3	AA3	C	114	126	Right-handed alpha
Helix 4	AA4	C	219	221	Right-handed 310
Helix 5	AA5	C	250	255	Right-handed alpha
Helix 6	AA6	C	320	333	Right-handed alpha
Helix 7	AA7	B	14	35	Right-handed alpha
Helix 8	AA8	B	90	94	Right-handed 310
Helix 9	AA9	B	114	126	Right-handed alpha
Helix 10	AB1	B	219	221	Right-handed 310
Helix 11	AB2	B	250	255	Right-handed alpha
Helix 12	AB3	B	320	333	Right-handed alpha
Helix 13	AB4	A	13	35	Right-handed alpha
Helix 14	AB5	A	90	94	Right-handed 310
Helix 15	AB6	A	114	126	Right-handed alpha
Helix 16	AB7	A	219	221	Right-handed 310
Helix 17	AB8	A	250	255	Right-handed alpha
Helix 18	AB9	A	320	333	Right-handed alpha

There are 18 sheets in PDB entry 7OOK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	36	47	first strand
Strand 2	C	223	238	anti-parallel
Strand 3	C	64	78	anti-parallel
Strand 4	C	159	169	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	36	47	first strand
Strand 2	C	223	238	anti-parallel
Strand 3	C	64	78	anti-parallel
Strand 4	C	181	182	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	54	57	first strand
Strand 2	C	191	196	anti-parallel
Strand 3	C	96	102	anti-parallel
Strand 4	C	108	113	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	153	154	first strand
Strand 2	C	85	87	anti-parallel
Strand 3	C	215	216	anti-parallel
Strand 4	C	203	204	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	256	266	first strand
Strand 2	C	372	382	anti-parallel
Strand 3	C	283	292	anti-parallel
Strand 4	C	340	344	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	274	277	first strand
Strand 2	C	359	364	anti-parallel
Strand 3	C	303	309	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	36	47	first strand
Strand 2	B	223	238	anti-parallel
Strand 3	B	64	78	anti-parallel
Strand 4	B	159	169	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	36	47	first strand
Strand 2	B	223	238	anti-parallel
Strand 3	B	64	78	anti-parallel
Strand 4	B	181	182	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	57	first strand
Strand 2	B	191	196	anti-parallel
Strand 3	B	96	102	anti-parallel
Strand 4	B	108	113	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	153	154	first strand
Strand 2	B	85	87	anti-parallel
Strand 3	B	215	216	anti-parallel
Strand 4	B	203	204	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	256	265	first strand
Strand 2	B	371	382	anti-parallel
Strand 3	B	283	293	anti-parallel
Strand 4	B	340	344	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	274	277	first strand
Strand 2	B	358	364	anti-parallel
Strand 3	B	303	310	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	47	first strand
Strand 2	A	223	238	anti-parallel
Strand 3	A	64	78	anti-parallel
Strand 4	A	159	169	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	47	first strand
Strand 2	A	223	238	anti-parallel
Strand 3	A	64	78	anti-parallel
Strand 4	A	181	182	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	57	first strand
Strand 2	A	191	196	anti-parallel
Strand 3	A	96	102	anti-parallel
Strand 4	A	108	113	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	153	154	first strand
Strand 2	A	85	87	anti-parallel
Strand 3	A	215	216	anti-parallel
Strand 4	A	203	204	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	256	266	first strand
Strand 2	A	371	382	anti-parallel
Strand 3	A	283	293	anti-parallel
Strand 4	A	340	344	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	274	277	first strand
Strand 2	A	358	364	anti-parallel
Strand 3	A	303	310	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7OOK

Analysis of interatomic Contacts of Structural Units in PDB entry:
7OOK