Analysis of interatomic Contacts of Structural Units in PDB entry:
7OP1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7OP1 entry

There is 1 chain in PDB entry 7OP1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 203	PHE 1393

There are 43 helices in PDB entry 7OP1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	228	241	Right-handed alpha
Helix 2	AA2	A	242	251	Right-handed alpha
Helix 3	AA3	A	251	259	Right-handed alpha
Helix 4	AA4	A	295	297	Right-handed 310
Helix 5	AA5	A	352	358	Right-handed alpha
Helix 6	AA6	A	362	373	Right-handed alpha
Helix 7	AA7	A	383	392	Right-handed alpha
Helix 8	AA8	A	394	410	Right-handed alpha
Helix 9	AA9	A	412	442	Right-handed alpha
Helix 10	AB1	A	516	521	Right-handed alpha
Helix 11	AB2	A	529	534	Right-handed alpha
Helix 12	AB3	A	565	568	Right-handed 310
Helix 13	AB4	A	569	578	Right-handed alpha
Helix 14	AB5	A	588	617	Right-handed alpha
Helix 15	AB6	A	620	636	Right-handed alpha
Helix 16	AB7	A	645	658	Right-handed alpha
Helix 17	AB8	A	666	671	Right-handed alpha
Helix 18	AB9	A	672	674	Right-handed 310
Helix 19	AC1	A	712	717	Right-handed alpha
Helix 20	AC2	A	748	760	Right-handed alpha
Helix 21	AC3	A	773	784	Right-handed alpha
Helix 22	AC4	A	880	892	Right-handed alpha
Helix 23	AC5	A	909	914	Right-handed alpha
Helix 24	AC6	A	915	921	Right-handed alpha
Helix 25	AC7	A	938	949	Right-handed alpha
Helix 26	AC8	A	962	972	Right-handed alpha
Helix 27	AC9	A	1044	1053	Right-handed alpha
Helix 28	AD1	A	1054	1065	Right-handed alpha
Helix 29	AD2	A	1072	1085	Right-handed alpha
Helix 30	AD3	A	1096	1098	Right-handed 310
Helix 31	AD4	A	1099	1106	Right-handed alpha
Helix 32	AD5	A	1131	1169	Right-handed alpha
Helix 33	AD6	A	1170	1172	Right-handed 310
Helix 34	AD7	A	1178	1187	Right-handed alpha
Helix 35	AD8	A	1187	1195	Right-handed alpha
Helix 36	AD9	A	1215	1241	Right-handed alpha
Helix 37	AE1	A	1262	1281	Right-handed alpha
Helix 38	AE2	A	1290	1293	Right-handed 310
Helix 39	AE3	A	1294	1314	Right-handed alpha
Helix 40	AE4	A	1316	1321	Right-handed alpha
Helix 41	AE5	A	1329	1353	Right-handed alpha
Helix 42	AE6	A	1353	1371	Right-handed alpha
Helix 43	AE7	A	1377	1393	Right-handed alpha

There are 12 sheets in PDB entry 7OP1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	206	210	first strand
Strand 2	A	217	225	anti-parallel
Strand 3	A	260	262	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	206	210	first strand
Strand 2	A	217	225	anti-parallel
Strand 3	A	270	274	anti-parallel
Strand 4	A	282	283	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	292	293	first strand
Strand 2	A	316	317	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	322	325	first strand
Strand 2	A	328	333	anti-parallel
Strand 3	A	338	340	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	450	453	first strand
Strand 2	A	460	463	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	472	474	first strand
Strand 2	A	559	564	anti-parallel
Strand 3	A	486	489	anti-parallel
Strand 4	A	536	537	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	508	510	first strand
Strand 2	A	494	497	anti-parallel
Strand 3	A	542	546	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	661	662	first strand
Strand 2	A	1123	1124	anti-parallel
Strand 3	A	1108	1111	parallel
Strand 4	A	1090	1094	parallel
Strand 5	A	676	677	parallel
Strand 6	A	952	953	parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	691	697	first strand
Strand 2	A	924	932	anti-parallel
Strand 3	A	894	903	anti-parallel
Strand 4	A	857	863	anti-parallel
Strand 5	A	844	851	anti-parallel
Strand 6	A	830	836	anti-parallel
Strand 7	A	792	793	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	764	766	first strand
Strand 2	A	769	771	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	955	956	first strand
Strand 2	A	1067	1068	parallel
Strand 3	A	1040	1041	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	981	985	first strand
Strand 2	A	997	1001	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7OP1

Analysis of interatomic Contacts of Structural Units in PDB entry:
7OP1