Analysis of interatomic Contacts of Structural Units in PDB entry:
7OP6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7OP6 entry

There are 2 chains in PDB entry 7OP6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 27	TYR 863
B	ASN 28	GLU 866

There are 52 helices in PDB entry 7OP6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	58	66	Right-handed alpha
Helix 2	AA2	A	78	87	Right-handed 310
Helix 3	AA3	A	98	103	Right-handed alpha
Helix 4	AA4	A	142	145	Right-handed 310
Helix 5	AA5	A	158	171	Right-handed alpha
Helix 6	AA6	A	184	189	Right-handed 310
Helix 7	AA7	A	192	197	Right-handed 310
Helix 8	AA8	A	368	372	Right-handed 310
Helix 9	AA9	A	373	387	Right-handed alpha
Helix 10	AB1	A	402	413	Right-handed alpha
Helix 11	AB2	A	430	449	Right-handed alpha
Helix 12	AB3	A	462	470	Right-handed alpha
Helix 13	AB4	A	471	475	Right-handed 310
Helix 14	AB5	A	477	493	Right-handed alpha
Helix 15	AB6	A	494	504	Right-handed alpha
Helix 16	AB7	A	521	525	Right-handed 310
Helix 17	AB8	A	541	547	Right-handed 310
Helix 18	AB9	A	563	568	Right-handed alpha
Helix 19	AC1	A	572	576	Right-handed 310
Helix 20	AC2	A	580	586	Right-handed alpha
Helix 21	AC3	A	593	604	Right-handed alpha
Helix 22	AC4	A	609	635	Right-handed alpha
Helix 23	AC5	A	666	676	Right-handed alpha
Helix 24	AC6	A	748	753	Right-handed alpha
Helix 25	AC7	A	778	782	Right-handed 310
Helix 26	AC8	A	858	863	Right-handed 310
Helix 27	AC9	B	58	65	Right-handed alpha
Helix 28	AD1	B	76	87	Right-handed 310
Helix 29	AD2	B	98	103	Right-handed alpha
Helix 30	AD3	B	142	145	Right-handed 310
Helix 31	AD4	B	158	169	Right-handed alpha
Helix 32	AD5	B	184	189	Right-handed 310
Helix 33	AD6	B	192	197	Right-handed 310
Helix 34	AD7	B	368	372	Right-handed 310
Helix 35	AD8	B	373	387	Right-handed alpha
Helix 36	AD9	B	402	412	Right-handed alpha
Helix 37	AE1	B	430	449	Right-handed alpha
Helix 38	AE2	B	462	470	Right-handed alpha
Helix 39	AE3	B	471	475	Right-handed 310
Helix 40	AE4	B	477	493	Right-handed alpha
Helix 41	AE5	B	494	504	Right-handed alpha
Helix 42	AE6	B	521	525	Right-handed 310
Helix 43	AE7	B	541	547	Right-handed 310
Helix 44	AE8	B	563	571	Right-handed alpha
Helix 45	AE9	B	572	576	Right-handed 310
Helix 46	AF1	B	580	585	Right-handed alpha
Helix 47	AF2	B	591	604	Right-handed alpha
Helix 48	AF3	B	609	635	Right-handed alpha
Helix 49	AF4	B	666	676	Right-handed alpha
Helix 50	AF5	B	748	753	Right-handed alpha
Helix 51	AF6	B	778	782	Right-handed 310
Helix 52	AF7	B	858	863	Right-handed 310

There are 25 sheets in PDB entry 7OP6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	35	first strand
Strand 2	A	213	218	anti-parallel
Strand 3	A	106	111	anti-parallel
Strand 4	A	137	140	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	51	52	first strand
Strand 2	A	41	44	anti-parallel
Strand 3	A	89	97	anti-parallel
Strand 4	A	148	157	anti-parallel
Strand 5	A	117	122	anti-parallel
Strand 6	A	125	130	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	114	115	first strand
Strand 2	A	208	209	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	221	233	first strand
Strand 2	A	237	248	anti-parallel
Strand 3	A	281	292	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	278	first strand
Strand 2	A	254	264	anti-parallel
Strand 3	A	308	316	anti-parallel
Strand 4	A	319	328	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	333	336	first strand
Strand 2	A	347	350	anti-parallel
Strand 3	A	353	355	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	339	340	first strand
Strand 2	A	343	344	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	508	510	first strand
Strand 2	A	454	458	parallel
Strand 3	A	415	419	parallel
Strand 4	A	391	394	parallel
Strand 5	A	357	362	parallel
Strand 6	A	641	644	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	530	531	first strand
Strand 2	A	553	555	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	679	686	first strand
Strand 2	A	689	696	anti-parallel
Strand 3	A	734	742	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	718	730	first strand
Strand 2	A	702	713	anti-parallel
Strand 3	A	755	762	anti-parallel
Strand 4	A	768	774	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	790	796	first strand
Strand 2	A	799	805	anti-parallel
Strand 3	A	837	842	anti-parallel
Strand 4	A	823	824	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	829	831	first strand
Strand 2	A	810	816	anti-parallel
Strand 3	A	855	857	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	35	first strand
Strand 2	B	213	218	anti-parallel
Strand 3	B	106	111	anti-parallel
Strand 4	B	137	140	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	52	first strand
Strand 2	B	41	44	anti-parallel
Strand 3	B	89	97	anti-parallel
Strand 4	B	148	157	anti-parallel
Strand 5	B	117	122	anti-parallel
Strand 6	B	125	131	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	221	233	first strand
Strand 2	B	237	248	anti-parallel
Strand 3	B	281	292	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	267	278	first strand
Strand 2	B	254	264	anti-parallel
Strand 3	B	308	316	anti-parallel
Strand 4	B	319	328	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	333	336	first strand
Strand 2	B	347	350	anti-parallel
Strand 3	B	353	355	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	339	340	first strand
Strand 2	B	343	344	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	508	510	first strand
Strand 2	B	454	458	parallel
Strand 3	B	415	419	parallel
Strand 4	B	391	394	parallel
Strand 5	B	357	362	parallel
Strand 6	B	641	644	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	530	531	first strand
Strand 2	B	553	555	parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	679	686	first strand
Strand 2	B	689	696	anti-parallel
Strand 3	B	734	742	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	718	730	first strand
Strand 2	B	702	713	anti-parallel
Strand 3	B	755	762	anti-parallel
Strand 4	B	768	775	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	790	796	first strand
Strand 2	B	799	805	anti-parallel
Strand 3	B	837	842	anti-parallel
Strand 4	B	823	824	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	829	831	first strand
Strand 2	B	810	816	anti-parallel
Strand 3	B	855	857	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7OP6

Analysis of interatomic Contacts of Structural Units in PDB entry:
7OP6