Analysis of interatomic Contacts of Structural Units in PDB entry:
7OPK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7OPK entry

There is 1 chain in PDB entry 7OPK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 2ASN 859
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 7OPK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 14Right-handed alpha
Helix 2
AA2
A
56 65Right-handed alpha
Helix 3
AA3
A
74 94Right-handed alpha
Helix 4
AA4
A
108 132Right-handed alpha
Helix 5
AA5
A
162 166Right-handed 310
Helix 6
AA6
A
170 191Right-handed alpha
Helix 7
AA7
A
192 195Right-handed 310
Helix 8
AA8
A
209 223Right-handed alpha
Helix 9
AA9
A
240 249Right-handed alpha
Helix 10
AB1
A
312 324Right-handed alpha
Helix 11
AB2
A
333 345Right-handed alpha
Helix 12
AB3
A
346 349Right-handed 310
Helix 13
AB4
A
360 363Right-handed 310
Helix 14
AB5
A
364 381Right-handed alpha
Helix 15
AB6
A
391 422Right-handed alpha
Helix 16
AB7
A
578 587Right-handed alpha
Helix 17
AB8
A
594 619Right-handed alpha
Helix 18
AB9
A
634 638Right-handed 310
Helix 19
AC1
A
640 644Right-handed 310
Helix 20
AC2
A
655 664Right-handed alpha
Helix 21
AC3
A
665 672Right-handed 310
Helix 22
AC4
A
673 675Right-handed 310
Helix 23
AC5
A
676 682Right-handed alpha
Helix 24
AC6
A
687 691Right-handed 310
Helix 25
AC7
A
716 726Right-handed alpha
Helix 26
AC8
A
727 731Right-handed 310
Helix 27
AC9
A
732 739Right-handed alpha
Helix 28
AD1
A
754 764Right-handed alpha
Helix 29
AD2
A
846 858Right-handed alpha
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There are 4 sheets in PDB entry 7OPK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 20first strand
Strand 2
A
307 311anti-parallel
Strand 3
A
254 259anti-parallel
Strand 4
A
233 236parallel
Strand 5
A
51 55parallel
Strand 6
A
98 102parallel
Strand 7
A
198 202parallel
Strand 8
A
745 749anti-parallel
Strand 9
A
816 822anti-parallel
Strand 10
A
785 788anti-parallel
Strand 11
A
772 775anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 28first strand
Strand 2
A
34 35anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
385 386first strand
Strand 2
A
389 390anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
697 698first strand
Strand 2
A
709 710anti-parallel
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