Analysis of interatomic Contacts of Structural Units in PDB entry:
7OPL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7OPL entry

There are 5 chains in PDB entry 7OPL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 338	ALA 1456
B	ALA 155	ILE 598
C	MET 1	LYS 412
D	TYR 22	LEU 455
E	HIS 13	LYS 125

There are 96 helices in PDB entry 7OPL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	409	425	Right-handed alpha
Helix 2	AA2	A	482	491	Right-handed alpha
Helix 3	AA3	A	522	524	Right-handed 310
Helix 4	AA4	A	597	606	Right-handed alpha
Helix 5	AA5	A	614	630	Right-handed alpha
Helix 6	AA6	A	642	655	Right-handed alpha
Helix 7	AA7	A	658	663	Right-handed 310
Helix 8	AA8	A	693	701	Right-handed alpha
Helix 9	AA9	A	707	715	Right-handed alpha
Helix 10	AB1	A	727	732	Right-handed alpha
Helix 11	AB2	A	734	760	Right-handed alpha
Helix 12	AB3	A	760	773	Right-handed alpha
Helix 13	AB4	A	775	782	Right-handed alpha
Helix 14	AB5	A	783	799	Right-handed alpha
Helix 15	AB6	A	863	873	Right-handed alpha
Helix 16	AB7	A	909	931	Right-handed alpha
Helix 17	AB8	A	935	961	Right-handed alpha
Helix 18	AB9	A	969	994	Right-handed alpha
Helix 19	AC1	A	1014	1033	Right-handed alpha
Helix 20	AC2	A	1064	1066	Right-handed 310
Helix 21	AC3	A	1085	1100	Right-handed alpha
Helix 22	AC4	A	1104	1125	Right-handed alpha
Helix 23	AC5	A	1129	1134	Right-handed 310
Helix 24	AC6	A	1142	1146	Right-handed 310
Helix 25	AC7	A	1152	1165	Right-handed alpha
Helix 26	AC8	A	1187	1192	Right-handed 310
Helix 27	AC9	A	1194	1201	Right-handed alpha
Helix 28	AD1	A	1207	1215	Right-handed alpha
Helix 29	AD2	A	1216	1225	Right-handed alpha
Helix 30	AD3	A	1231	1240	Right-handed alpha
Helix 31	AD4	A	1242	1249	Right-handed alpha
Helix 32	AD5	A	1268	1273	Right-handed alpha
Helix 33	AD6	A	1299	1303	Right-handed 310
Helix 34	AD7	A	1305	1309	Right-handed 310
Helix 35	AD8	A	1318	1321	Right-handed 310
Helix 36	AD9	A	1322	1343	Right-handed alpha
Helix 37	AE1	A	1384	1400	Right-handed alpha
Helix 38	AE2	A	1400	1405	Right-handed alpha
Helix 39	AE3	A	1410	1421	Right-handed alpha
Helix 40	AE4	A	1423	1442	Right-handed alpha
Helix 41	AE5	A	1451	1456	Right-handed alpha
Helix 42	AE6	B	212	236	Right-handed alpha
Helix 43	AE7	B	275	280	Right-handed alpha
Helix 44	AE8	B	331	336	Right-handed alpha
Helix 45	AE9	B	357	371	Right-handed alpha
Helix 46	AF1	B	386	391	Right-handed alpha
Helix 47	AF2	B	397	413	Right-handed alpha
Helix 48	AF3	B	446	452	Right-handed alpha
Helix 49	AF4	B	475	484	Right-handed alpha
Helix 50	AF5	B	493	505	Right-handed alpha
Helix 51	AF6	B	521	529	Right-handed alpha
Helix 52	AF7	C	5	7	Right-handed 310
Helix 53	AF8	C	8	20	Right-handed alpha
Helix 54	AF9	C	22	32	Right-handed alpha
Helix 55	AG1	C	33	35	Right-handed 310
Helix 56	AG2	C	50	52	Right-handed 310
Helix 57	AG3	C	62	74	Right-handed alpha
Helix 58	AG4	C	87	94	Right-handed 310
Helix 59	AG5	C	113	115	Right-handed 310
Helix 60	AG6	C	128	131	Right-handed 310
Helix 61	AG7	C	132	149	Right-handed alpha
Helix 62	AG8	C	171	176	Right-handed alpha
Helix 63	AG9	C	178	189	Right-handed alpha
Helix 64	AH1	C	209	227	Right-handed alpha
Helix 65	AH2	C	236	247	Right-handed alpha
Helix 66	AH3	C	248	250	Right-handed 310
Helix 67	AH4	C	251	262	Right-handed alpha
Helix 68	AH5	C	264	283	Right-handed alpha
Helix 69	AH6	C	291	302	Right-handed alpha
Helix 70	AH7	C	306	312	Right-handed alpha
Helix 71	AH8	C	349	359	Right-handed alpha
Helix 72	AH9	C	381	386	Right-handed 310
Helix 73	AI1	C	388	412	Right-handed alpha
Helix 74	AI2	D	39	63	Right-handed alpha
Helix 75	AI3	D	67	82	Right-handed alpha
Helix 76	AI4	D	88	111	Right-handed alpha
Helix 77	AI5	D	113	135	Right-handed alpha
Helix 78	AI6	D	136	147	Right-handed alpha
Helix 79	AI7	D	155	170	Right-handed alpha
Helix 80	AI8	D	191	196	Right-handed alpha
Helix 81	AI9	D	210	241	Right-handed alpha
Helix 82	AJ1	D	246	251	Right-handed alpha
Helix 83	AJ2	D	275	284	Right-handed alpha
Helix 84	AJ3	D	285	299	Right-handed alpha
Helix 85	AJ4	D	302	316	Right-handed alpha
Helix 86	AJ5	D	319	333	Right-handed alpha
Helix 87	AJ6	D	337	354	Right-handed alpha
Helix 88	AJ7	D	366	373	Right-handed alpha
Helix 89	AJ8	D	384	389	Right-handed alpha
Helix 90	AJ9	D	390	401	Right-handed alpha
Helix 91	AK1	D	404	417	Right-handed alpha
Helix 92	AK2	D	419	433	Right-handed alpha
Helix 93	AK3	D	443	455	Right-handed alpha
Helix 94	AK4	E	22	26	Right-handed 310
Helix 95	AK5	E	34	49	Right-handed alpha
Helix 96	AK6	E	60	64	Right-handed 310

There are 20 sheets in PDB entry 7OPL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	519	520	first strand
Strand 2	A	372	380	parallel
Strand 3	A	359	367	anti-parallel
Strand 4	A	340	349	anti-parallel
Strand 5	A	498	502	anti-parallel
Strand 6	A	526	528	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	434	436	first strand
Strand 2	A	451	457	anti-parallel
Strand 3	A	385	391	anti-parallel
Strand 4	A	473	477	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	394	396	first strand
Strand 2	A	403	407	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	581	583	first strand
Strand 2	A	559	568	anti-parallel
Strand 3	A	537	545	anti-parallel
Strand 4	A	633	636	parallel
Strand 5	A	690	692	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	585	586	first strand
Strand 2	A	610	611	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	850	852	first strand
Strand 2	A	1043	1051	anti-parallel
Strand 3	A	856	858	anti-parallel
Strand 4	A	1006	1009	anti-parallel
Strand 5	A	997	1001	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	850	852	first strand
Strand 2	A	1043	1051	anti-parallel
Strand 3	A	1054	1062	anti-parallel
Strand 4	A	1068	1075	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1135	1138	first strand
Strand 2	A	1174	1177	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1279	1282	first strand
Strand 2	A	1289	1292	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1356	1357	first strand
Strand 2	A	1346	1348	anti-parallel
Strand 3	A	1379	1381	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1448	1450	first strand
Strand 2	D	36	38	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	170	174	first strand
Strand 2	B	590	597	anti-parallel
Strand 3	B	570	576	anti-parallel
Strand 4	B	340	346	anti-parallel
Strand 5	B	374	378	parallel
Strand 6	B	419	423	parallel
Strand 7	B	453	455	parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	194	195	first strand
Strand 2	B	460	464	anti-parallel
Strand 3	B	467	471	anti-parallel
Strand 4	B	537	539	parallel
Strand 5	B	554	558	parallel
Strand 6	B	547	551	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	283	285	first strand
Strand 2	B	270	273	anti-parallel
Strand 3	B	255	259	anti-parallel
Strand 4	B	301	302	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	295	296	first strand
Strand 2	B	485	486	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	54	58	first strand
Strand 2	C	43	48	anti-parallel
Strand 3	C	77	84	anti-parallel
Strand 4	C	101	103	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	54	58	first strand
Strand 2	C	43	48	anti-parallel
Strand 3	C	77	84	anti-parallel
Strand 4	C	317	318	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	109	111	first strand
Strand 2	C	164	169	anti-parallel
Strand 3	C	155	159	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	152	153	first strand
Strand 2	D	184	187	anti-parallel
Strand 3	D	206	209	anti-parallel
Strand 4	D	202	203	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	14	19	first strand
Strand 2	E	118	123	anti-parallel
Strand 3	E	85	89	parallel
Strand 4	E	70	73	anti-parallel
Strand 5	E	103	109	anti-parallel
Strand 6	E	51	55	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7OPL

Analysis of interatomic Contacts of Structural Units in PDB entry:
7OPL