Analysis of interatomic Contacts of Structural Units in PDB entry:
7OQC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7OQC entry

There are 18 chains in PDB entry 7OQC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
F	ASN 161	ALA 523
I	U -2	N 156
E	MET 1	PRO 544
J	MET 1	ARG 312
1	A 1	U 565
G	GLN 43	SER 295
A	SER 2	ARG 148
C	ARG 3	ASP 197
b	SER 2	LYS 131
d	MET 3	ILE 95
e	LYS 8	ALA 93
f	PRO 12	LEU 84
g	VAL 2	ILE 77
h	MET 1	SER 119
i	ARG 8	PRO 108
H	MET 4	ARG 244
D	ALA 43	GLU 627
B	MET 1	GLY 188

There are121 helices in PDB entry 7OQC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	F	175	184	Right-handed alpha
Helix 2	AA2	F	214	225	Right-handed alpha
Helix 3	AA3	F	325	333	Right-handed alpha
Helix 4	AA4	F	357	369	Right-handed alpha
Helix 5	AA5	F	385	397	Right-handed alpha
Helix 6	AA6	F	501	519	Right-handed alpha
Helix 7	AA7	E	2	9	Right-handed alpha
Helix 8	AA8	E	10	23	Right-handed alpha
Helix 9	AA9	E	26	41	Right-handed alpha
Helix 10	AB1	E	49	67	Right-handed alpha
Helix 11	AB2	E	70	84	Right-handed alpha
Helix 12	AB3	E	87	101	Right-handed alpha
Helix 13	AB4	E	105	120	Right-handed alpha
Helix 14	AB5	E	122	138	Right-handed alpha
Helix 15	AB6	E	143	158	Right-handed alpha
Helix 16	AB7	E	162	172	Right-handed alpha
Helix 17	AB8	E	179	192	Right-handed alpha
Helix 18	AB9	E	195	202	Right-handed 310
Helix 19	AC1	E	204	211	Right-handed alpha
Helix 20	AC2	E	222	255	Right-handed alpha
Helix 21	AC3	E	272	290	Right-handed alpha
Helix 22	AC4	E	291	307	Right-handed alpha
Helix 23	AC5	E	310	323	Right-handed alpha
Helix 24	AC6	E	326	338	Right-handed alpha
Helix 25	AC7	E	344	358	Right-handed alpha
Helix 26	AC8	E	360	375	Right-handed alpha
Helix 27	AC9	E	378	382	Right-handed 310
Helix 28	AD1	E	384	403	Right-handed alpha
Helix 29	AD2	E	420	429	Right-handed alpha
Helix 30	AD3	E	436	444	Right-handed alpha
Helix 31	AD4	E	450	460	Right-handed alpha
Helix 32	AD5	E	460	468	Right-handed alpha
Helix 33	AD6	E	469	475	Right-handed alpha
Helix 34	AD7	E	475	488	Right-handed alpha
Helix 35	AD8	E	493	505	Right-handed alpha
Helix 36	AD9	E	517	529	Right-handed alpha
Helix 37	AE1	E	532	540	Right-handed alpha
Helix 38	AE2	J	8	13	Right-handed alpha
Helix 39	AE3	J	35	43	Right-handed alpha
Helix 40	AE4	J	43	52	Right-handed alpha
Helix 41	AE5	J	277	302	Right-handed alpha
Helix 42	AE6	J	303	312	Right-handed alpha
Helix 43	AE7	G	46	57	Right-handed alpha
Helix 44	AE8	G	79	93	Right-handed alpha
Helix 45	AE9	G	121	142	Right-handed alpha
Helix 46	AF1	G	207	220	Right-handed alpha
Helix 47	AF2	G	230	252	Right-handed alpha
Helix 48	AF3	G	262	270	Right-handed alpha
Helix 49	AF4	G	270	293	Right-handed alpha
Helix 50	AF5	A	15	28	Right-handed alpha
Helix 51	AF6	A	83	95	Right-handed alpha
Helix 52	AF7	A	115	124	Right-handed alpha
Helix 53	AF8	A	134	148	Right-handed alpha
Helix 54	AF9	C	17	25	Right-handed alpha
Helix 55	AG1	C	27	48	Right-handed alpha
Helix 56	AG2	C	60	71	Right-handed alpha
Helix 57	AG3	C	79	100	Right-handed alpha
Helix 58	AG4	C	103	109	Right-handed alpha
Helix 59	AG5	C	127	134	Right-handed alpha
Helix 60	AG6	C	140	147	Right-handed alpha
Helix 61	AG7	C	182	187	Right-handed 310
Helix 62	AG8	b	56	62	Right-handed alpha
Helix 63	AG9	b	104	131	Right-handed alpha
Helix 64	AH1	d	5	14	Right-handed alpha
Helix 65	AH2	d	65	67	Right-handed 310
Helix 66	AH3	d	75	80	Right-handed 310
Helix 67	AH4	d	81	85	Right-handed 310
Helix 68	AH5	e	12	24	Right-handed alpha
Helix 69	AH6	f	14	21	Right-handed alpha
Helix 70	AH7	g	7	11	Right-handed 310
Helix 71	AH8	h	3	9	Right-handed alpha
Helix 72	AH9	h	59	68	Right-handed alpha
Helix 73	AI1	h	102	107	Right-handed alpha
Helix 74	AI2	h	109	119	Right-handed alpha
Helix 75	AI3	i	17	28	Right-handed alpha
Helix 76	AI4	i	31	40	Right-handed alpha
Helix 77	AI5	H	6	19	Right-handed alpha
Helix 78	AI6	H	45	51	Right-handed alpha
Helix 79	AI7	H	73	86	Right-handed alpha
Helix 80	AI8	H	90	124	Right-handed alpha
Helix 81	AI9	H	125	138	Right-handed alpha
Helix 82	AJ1	H	173	194	Right-handed alpha
Helix 83	AJ2	H	213	222	Right-handed alpha
Helix 84	AJ3	H	223	244	Right-handed alpha
Helix 85	AJ4	D	44	63	Right-handed alpha
Helix 86	AJ5	D	66	84	Right-handed alpha
Helix 87	AJ6	D	87	100	Right-handed alpha
Helix 88	AJ7	D	103	118	Right-handed alpha
Helix 89	AJ8	D	121	131	Right-handed alpha
Helix 90	AJ9	D	142	149	Right-handed alpha
Helix 91	AK1	D	160	174	Right-handed alpha
Helix 92	AK2	D	176	189	Right-handed alpha
Helix 93	AK3	D	194	206	Right-handed alpha
Helix 94	AK4	D	213	240	Right-handed alpha
Helix 95	AK5	D	247	252	Right-handed alpha
Helix 96	AK6	D	252	265	Right-handed alpha
Helix 97	AK7	D	270	285	Right-handed alpha
Helix 98	AK8	D	289	303	Right-handed alpha
Helix 99	AK9	D	306	321	Right-handed alpha
Helix 100	AL1	D	327	340	Right-handed alpha
Helix 101	AL2	D	344	360	Right-handed alpha
Helix 102	AL3	D	366	380	Right-handed alpha
Helix 103	AL4	D	388	412	Right-handed alpha
Helix 104	AL5	D	420	425	Right-handed alpha
Helix 105	AL6	D	430	443	Right-handed alpha
Helix 106	AL7	D	448	458	Right-handed alpha
Helix 107	AL8	D	467	481	Right-handed alpha
Helix 108	AL9	D	484	493	Right-handed alpha
Helix 109	AM1	D	501	517	Right-handed alpha
Helix 110	AM2	D	521	528	Right-handed alpha
Helix 111	AM3	D	539	544	Right-handed alpha
Helix 112	AM4	D	561	565	Right-handed 310
Helix 113	AM5	D	591	596	Right-handed alpha
Helix 114	AM6	D	618	624	Right-handed alpha
Helix 115	AM7	B	9	16	Right-handed alpha
Helix 116	AM8	B	44	50	Right-handed alpha
Helix 117	AM9	B	50	59	Right-handed alpha
Helix 118	AN1	B	65	91	Right-handed alpha
Helix 119	AN2	B	97	101	Right-handed 310
Helix 120	AN3	B	119	128	Right-handed alpha
Helix 121	AN4	B	157	171	Right-handed alpha

There are 15 sheets in PDB entry 7OQC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	163	167	first strand
Strand 2	F	204	212	anti-parallel
Strand 3	F	190	197	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	229	230	first strand
Strand 2	F	233	234	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	294	295	first strand
Strand 2	C	179	180	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	339	341	first strand
Strand 2	F	350	355	anti-parallel
Strand 3	F	314	318	anti-parallel
Strand 4	F	379	382	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	444	446	first strand
Strand 2	F	494	496	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	20	21	first strand
Strand 2	J	5	7	anti-parallel
Strand 3	J	29	31	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	69	74	first strand
Strand 2	G	113	118	anti-parallel
Strand 3	G	98	101	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	157	163	first strand
Strand 2	G	199	206	anti-parallel
Strand 3	G	188	189	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	66	first strand
Strand 2	A	77	81	anti-parallel
Strand 3	A	3	7	anti-parallel
Strand 4	A	107	110	anti-parallel

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There are 37 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	55	56	first strand
Strand 2	g	38	46	anti-parallel
Strand 3	g	60	63	anti-parallel
Strand 4	e	89	92	anti-parallel
Strand 5	e	27	29	anti-parallel
Strand 6	e	38	45	anti-parallel
Strand 7	e	52	60	anti-parallel
Strand 8	e	75	82	anti-parallel
Strand 9	f	78	83	anti-parallel
Strand 10	f	26	31	anti-parallel
Strand 11	f	37	45	anti-parallel
Strand 12	f	51	60	anti-parallel
Strand 13	f	63	73	anti-parallel
Strand 14	i	101	106	anti-parallel
Strand 15	i	43	48	anti-parallel
Strand 16	i	53	60	anti-parallel
Strand 17	i	67	78	anti-parallel
Strand 18	i	85	96	anti-parallel
Strand 19	h	92	96	anti-parallel
Strand 20	h	14	19	anti-parallel
Strand 21	h	24	32	anti-parallel
Strand 22	h	38	46	anti-parallel
Strand 23	h	80	87	anti-parallel
Strand 24	b	94	99	anti-parallel
Strand 25	b	19	23	anti-parallel
Strand 26	b	29	34	anti-parallel
Strand 27	b	43	52	anti-parallel
Strand 28	b	78	87	anti-parallel
Strand 29	d	69	73	anti-parallel
Strand 30	d	18	23	anti-parallel
Strand 31	d	28	35	anti-parallel
Strand 32	d	42	50	anti-parallel
Strand 33	d	56	64	anti-parallel
Strand 34	g	68	73	anti-parallel
Strand 35	g	14	19	anti-parallel
Strand 36	g	23	31	anti-parallel
Strand 37	g	38	46	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	199	200	first strand
Strand 2	H	207	208	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	576	577	first strand
Strand 2	D	615	616	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	582	583	first strand
Strand 2	D	605	606	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	133	140	first strand
Strand 2	B	147	155	anti-parallel
Strand 3	B	108	111	anti-parallel
Strand 4	B	183	185	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	174	176	first strand
Strand 2	B	179	181	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7OQC

Analysis of interatomic Contacts of Structural Units in PDB entry:
7OQC