Analysis of interatomic Contacts of Structural Units in PDB entry:
7OQH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7OQH entry

There are 6 chains in PDB entry 7OQH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 222	SER 592
B	VAL 222	SER 592
C	VAL 222	SER 592
D	VAL 222	SER 592
E	VAL 222	SER 592
F	VAL 223	VAL 589

There are 84 helices in PDB entry 7OQH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	254	262	Right-handed alpha
Helix 2	AA2	A	331	341	Right-handed alpha
Helix 3	AA3	A	358	374	Right-handed alpha
Helix 4	AA4	A	387	398	Right-handed alpha
Helix 5	AA5	A	410	432	Right-handed alpha
Helix 6	AA6	A	441	453	Right-handed alpha
Helix 7	AA7	A	466	468	Right-handed 310
Helix 8	AA8	A	469	478	Right-handed alpha
Helix 9	AA9	A	500	509	Right-handed alpha
Helix 10	AB1	A	522	527	Right-handed alpha
Helix 11	AB2	A	542	546	Right-handed 310
Helix 12	AB3	A	548	565	Right-handed alpha
Helix 13	AB4	A	566	575	Right-handed alpha
Helix 14	AB5	A	582	592	Right-handed alpha
Helix 15	AB6	B	254	262	Right-handed alpha
Helix 16	AB7	B	301	305	Right-handed 310
Helix 17	AB8	B	309	313	Right-handed 310
Helix 18	AB9	B	334	341	Right-handed alpha
Helix 19	AC1	B	358	374	Right-handed alpha
Helix 20	AC2	B	387	398	Right-handed alpha
Helix 21	AC3	B	410	431	Right-handed alpha
Helix 22	AC4	B	441	453	Right-handed alpha
Helix 23	AC5	B	466	469	Right-handed 310
Helix 24	AC6	B	470	478	Right-handed alpha
Helix 25	AC7	B	500	510	Right-handed alpha
Helix 26	AC8	B	521	527	Right-handed alpha
Helix 27	AC9	B	548	564	Right-handed alpha
Helix 28	AD1	B	566	581	Right-handed alpha
Helix 29	AD2	B	582	592	Right-handed alpha
Helix 30	AD3	C	255	262	Right-handed alpha
Helix 31	AD4	C	334	341	Right-handed alpha
Helix 32	AD5	C	358	374	Right-handed alpha
Helix 33	AD6	C	387	398	Right-handed alpha
Helix 34	AD7	C	410	431	Right-handed alpha
Helix 35	AD8	C	441	453	Right-handed alpha
Helix 36	AD9	C	469	477	Right-handed alpha
Helix 37	AE1	C	500	510	Right-handed alpha
Helix 38	AE2	C	521	526	Right-handed alpha
Helix 39	AE3	C	542	546	Right-handed 310
Helix 40	AE4	C	548	564	Right-handed alpha
Helix 41	AE5	C	566	579	Right-handed alpha
Helix 42	AE6	C	582	592	Right-handed alpha
Helix 43	AE7	D	254	261	Right-handed alpha
Helix 44	AE8	D	332	341	Right-handed alpha
Helix 45	AE9	D	358	374	Right-handed alpha
Helix 46	AF1	D	387	398	Right-handed alpha
Helix 47	AF2	D	410	431	Right-handed alpha
Helix 48	AF3	D	441	453	Right-handed alpha
Helix 49	AF4	D	466	468	Right-handed 310
Helix 50	AF5	D	469	478	Right-handed alpha
Helix 51	AF6	D	500	510	Right-handed alpha
Helix 52	AF7	D	521	527	Right-handed alpha
Helix 53	AF8	D	542	546	Right-handed 310
Helix 54	AF9	D	548	565	Right-handed alpha
Helix 55	AG1	D	566	578	Right-handed alpha
Helix 56	AG2	D	583	592	Right-handed alpha
Helix 57	AG3	E	255	262	Right-handed alpha
Helix 58	AG4	E	335	340	Right-handed alpha
Helix 59	AG5	E	358	374	Right-handed alpha
Helix 60	AG6	E	387	398	Right-handed alpha
Helix 61	AG7	E	410	432	Right-handed alpha
Helix 62	AG8	E	441	453	Right-handed alpha
Helix 63	AG9	E	465	468	Right-handed 310
Helix 64	AH1	E	469	477	Right-handed alpha
Helix 65	AH2	E	500	510	Right-handed alpha
Helix 66	AH3	E	521	526	Right-handed alpha
Helix 67	AH4	E	542	546	Right-handed 310
Helix 68	AH5	E	548	565	Right-handed alpha
Helix 69	AH6	E	566	580	Right-handed alpha
Helix 70	AH7	E	584	592	Right-handed alpha
Helix 71	AH8	F	255	262	Right-handed alpha
Helix 72	AH9	F	309	313	Right-handed 310
Helix 73	AI1	F	331	341	Right-handed alpha
Helix 74	AI2	F	358	374	Right-handed alpha
Helix 75	AI3	F	387	398	Right-handed alpha
Helix 76	AI4	F	410	431	Right-handed alpha
Helix 77	AI5	F	441	451	Right-handed alpha
Helix 78	AI6	F	466	468	Right-handed 310
Helix 79	AI7	F	469	478	Right-handed alpha
Helix 80	AI8	F	500	510	Right-handed alpha
Helix 81	AI9	F	521	527	Right-handed alpha
Helix 82	AJ1	F	548	564	Right-handed alpha
Helix 83	AJ2	F	566	581	Right-handed alpha
Helix 84	AJ3	F	582	589	Right-handed alpha

There are 14 sheets in PDB entry 7OQH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	251	253	first strand
Strand 2	A	237	239	anti-parallel
Strand 3	A	227	231	anti-parallel
Strand 4	A	268	269	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	322	323	first strand
Strand 2	A	343	344	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	401	403	first strand
Strand 2	A	378	382	parallel
Strand 3	A	435	439	parallel
Strand 4	A	487	495	parallel
Strand 5	A	480	481	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	401	403	first strand
Strand 2	A	378	382	parallel
Strand 3	A	435	439	parallel
Strand 4	A	487	495	parallel
Strand 5	A	348	353	parallel
Strand 6	A	516	520	parallel
Strand 7	A	533	539	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	250	253	first strand
Strand 2	B	237	240	anti-parallel
Strand 3	B	226	231	anti-parallel
Strand 4	B	268	273	anti-parallel
Strand 5	B	291	297	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	401	406	first strand
Strand 2	B	378	386	parallel
Strand 3	B	435	440	parallel
Strand 4	B	488	495	parallel
Strand 5	B	348	353	parallel
Strand 6	B	516	520	parallel
Strand 7	B	533	540	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	253	254	first strand
Strand 2	C	236	240	anti-parallel
Strand 3	C	227	231	anti-parallel
Strand 4	C	268	272	anti-parallel
Strand 5	C	293	297	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	401	406	first strand
Strand 2	C	378	386	parallel
Strand 3	C	435	440	parallel
Strand 4	C	488	495	parallel
Strand 5	C	348	353	parallel
Strand 6	C	516	520	parallel
Strand 7	C	533	540	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	238	240	first strand
Strand 2	D	226	230	anti-parallel
Strand 3	D	268	273	anti-parallel
Strand 4	D	291	297	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	401	406	first strand
Strand 2	D	378	386	parallel
Strand 3	D	434	440	parallel
Strand 4	D	487	495	parallel
Strand 5	D	348	353	parallel
Strand 6	D	516	520	parallel
Strand 7	D	533	540	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	251	254	first strand
Strand 2	E	236	241	anti-parallel
Strand 3	E	227	231	anti-parallel
Strand 4	E	268	269	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	401	406	first strand
Strand 2	E	378	386	parallel
Strand 3	E	434	440	parallel
Strand 4	E	487	495	parallel
Strand 5	E	348	353	parallel
Strand 6	E	516	519	parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	289	290	first strand
Strand 2	F	251	254	parallel
Strand 3	F	236	240	anti-parallel
Strand 4	F	226	230	anti-parallel
Strand 5	F	268	270	anti-parallel
Strand 6	F	296	297	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	401	406	first strand
Strand 2	F	378	386	parallel
Strand 3	F	434	440	parallel
Strand 4	F	487	495	parallel
Strand 5	F	348	353	parallel
Strand 6	F	516	520	parallel
Strand 7	F	533	539	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7OQH

Analysis of interatomic Contacts of Structural Units in PDB entry:
7OQH