Analysis of interatomic
Contacts of Structural
Units in PDB entry:
Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332).
This page provides analyses of
contacts formed by:
For analysis of ligand-protein contacts, use:
3D structure can be seen in additional window with
STING software for 7OR7 entry
Note, this PDB entry contains
modified residue(s) PHOSPHOSERINE (SEP) . This residue is
treated as heterogroup (ligand) both in the
PDB entry and in LPC/CSU analysis.
There are 4 chains in PDB entry 7OR7
(CSU analysis of residue contacts immediately below table)
| Chain ID |
Initial residue | Terminal residue |
A
|
GLY -4 | SER 37 |
A
|
GLU 39 | THR 231 |
B
|
ARG 1914 | PHE 1916 |
B
|
ALA 1918 | ARG 1921 |
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There are 11
helices in PDB entry 7OR7. Click on helix of interest for
CSU analysis.
Helix number
| Helix ID | Chain ID |
Initial residue | Terminal residue |
Helix class |
| Helix 1 |
AA1 | A
| 2 |
16 | Right-handed alpha |
| Helix 2 |
AA2 | A
| 18 |
32 | Right-handed alpha |
| Helix 3 |
AA3 | A
| 37 |
70 | Right-handed alpha |
| Helix 4 |
AA4 | A
| 79 |
105 | Right-handed alpha |
| Helix 5 |
AA5 | A
| 113 |
135 | Right-handed alpha |
| Helix 6 |
AA6 | A
| 139 |
162 | Right-handed alpha |
| Helix 7 |
AA7 | A
| 166 |
183 | Right-handed alpha |
| Helix 8 |
AA8 | A
| 186 |
205 | Right-handed alpha |
| Helix 9 |
AA9 | A
| 206 |
208 | Right-handed 310 |
| Helix 10 |
AB1 | A
| 209 |
231 | Right-handed alpha |
| Helix 11 |
AB2 | B
| 1917 |
1921 | Right-handed 310 |
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There are no sheets in PDB entry
7OR7
Please mail
questions/suggestions concerning this page
to
Vladimir.Sobolev@weizmann.
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