Analysis of interatomic Contacts of Structural Units in PDB entry:
7ORK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7ORK entry

There are 4 chains in PDB entry 7ORK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 2237
H
 A 1 G 17
T
 A 8 U 25
P
 A 2 A 2
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are100 helices in PDB entry 7ORK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 16Right-handed alpha
Helix 2
AA2
A
19 45Right-handed alpha
Helix 3
AA3
A
54 63Right-handed alpha
Helix 4
AA4
A
98 121Right-handed alpha
Helix 5
AA5
A
142 149Right-handed alpha
Helix 6
AA6
A
158 172Right-handed alpha
Helix 7
AA7
A
175 183Right-handed alpha
Helix 8
AA8
A
200 203Right-handed 310
Helix 9
AA9
A
204 213Right-handed alpha
Helix 10
AB1
A
215 227Right-handed alpha
Helix 11
AB2
A
237 247Right-handed alpha
Helix 12
AB3
A
247 260Right-handed alpha
Helix 13
AB4
A
261 264Right-handed 310
Helix 14
AB5
A
273 292Right-handed alpha
Helix 15
AB6
A
297 301Right-handed 310
Helix 16
AB7
A
319 333Right-handed alpha
Helix 17
AB8
A
340 350Right-handed alpha
Helix 18
AB9
A
356 371Right-handed alpha
Helix 19
AC1
A
407 417Right-handed alpha
Helix 20
AC2
A
447 466Right-handed alpha
Helix 21
AC3
A
475 489Right-handed alpha
Helix 22
AC4
A
489 501Right-handed alpha
Helix 23
AC5
A
502 521Right-handed alpha
Helix 24
AC6
A
598 620Right-handed alpha
Helix 25
AC7
A
626 639Right-handed alpha
Helix 26
AC8
A
642 661Right-handed alpha
Helix 27
AC9
A
665 673Right-handed alpha
Helix 28
AD1
A
680 702Right-handed alpha
Helix 29
AD2
A
737 747Right-handed alpha
Helix 30
AD3
A
748 751Right-handed 310
Helix 31
AD4
A
758 781Right-handed alpha
Helix 32
AD5
A
795 813Right-handed alpha
Helix 33
AD6
A
816 825Right-handed alpha
Helix 34
AD7
A
830 838Right-handed 310
Helix 35
AD8
A
849 854Right-handed alpha
Helix 36
AD9
A
875 879Right-handed 310
Helix 37
AE1
A
880 884Right-handed 310
Helix 38
AE2
A
892 900Right-handed alpha
Helix 39
AE3
A
911 921Right-handed alpha
Helix 40
AE4
A
928 940Right-handed alpha
Helix 41
AE5
A
964 980Right-handed alpha
Helix 42
AE6
A
995 1030Right-handed alpha
Helix 43
AE7
A
1040 1047Right-handed alpha
Helix 44
AE8
A
1070 1079Right-handed alpha
Helix 45
AE9
A
1084 1099Right-handed alpha
Helix 46
AF1
A
1106 1115Right-handed alpha
Helix 47
AF2
A
1123 1129Right-handed alpha
Helix 48
AF3
A
1148 1174Right-handed alpha
Helix 49
AF4
A
1201 1220Right-handed alpha
Helix 50
AF5
A
1252 1262Right-handed alpha
Helix 51
AF6
A
1267 1285Right-handed alpha
Helix 52
AF7
A
1288 1307Right-handed alpha
Helix 53
AF8
A
1317 1321Right-handed 310
Helix 54
AF9
A
1325 1329Right-handed 310
Helix 55
AG1
A
1330 1334Right-handed 310
Helix 56
AG2
A
1340 1347Right-handed alpha
Helix 57
AG3
A
1350 1364Right-handed alpha
Helix 58
AG4
A
1366 1370Right-handed 310
Helix 59
AG5
A
1373 1379Right-handed alpha
Helix 60
AG6
A
1380 1384Right-handed 310
Helix 61
AG7
A
1390 1403Right-handed alpha
Helix 62
AG8
A
1434 1440Right-handed alpha
Helix 63
AG9
A
1441 1452Right-handed alpha
Helix 64
AH1
A
1455 1467Right-handed alpha
Helix 65
AH2
A
1468 1472Right-handed 310
Helix 66
AH3
A
1477 1489Right-handed alpha
Helix 67
AH4
A
1493 1498Right-handed alpha
Helix 68
AH5
A
1502 1513Right-handed alpha
Helix 69
AH6
A
1548 1562Right-handed alpha
Helix 70
AH7
A
1566 1578Right-handed alpha
Helix 71
AH8
A
1581 1593Right-handed alpha
Helix 72
AH9
A
1612 1617Right-handed 310
Helix 73
AI1
A
1622 1633Right-handed alpha
Helix 74
AI2
A
1641 1659Right-handed alpha
Helix 75
AI3
A
1660 1677Right-handed alpha
Helix 76
AI4
A
1680 1703Right-handed alpha
Helix 77
AI5
A
1717 1728Right-handed alpha
Helix 78
AI6
A
1756 1779Right-handed alpha
Helix 79
AI7
A
1780 1782Right-handed 310
Helix 80
AI8
A
1783 1795Right-handed alpha
Helix 81
AI9
A
1802 1811Right-handed alpha
Helix 82
AJ1
A
1814 1817Right-handed 310
Helix 83
AJ2
A
1818 1826Right-handed alpha
Helix 84
AJ3
A
1829 1838Right-handed alpha
Helix 85
AJ4
A
1839 1842Right-handed 310
Helix 86
AJ5
A
1892 1905Right-handed alpha
Helix 87
AJ6
A
1944 1956Right-handed alpha
Helix 88
AJ7
A
1983 1991Right-handed alpha
Helix 89
AJ8
A
2014 2019Right-handed 310
Helix 90
AJ9
A
2033 2038Right-handed alpha
Helix 91
AK1
A
2039 2043Right-handed 310
Helix 92
AK2
A
2046 2052Right-handed alpha
Helix 93
AK3
A
2054 2060Right-handed alpha
Helix 94
AK4
A
2072 2077Right-handed 310
Helix 95
AK5
A
2109 2129Right-handed alpha
Helix 96
AK6
A
2138 2155Right-handed alpha
Helix 97
AK7
A
2161 2175Right-handed alpha
Helix 98
AK8
A
2178 2183Right-handed alpha
Helix 99
AK9
A
2200 2210Right-handed alpha
Helix 100
AL1
A
2218 2237Right-handed alpha
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There are 17 sheets in PDB entry 7ORK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 84first strand
Strand 2
A
87 94anti-parallel
Strand 3
A
124 131parallel
Strand 4
A
138 140anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
293 295first strand
Strand 2
A
441 443parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
386 387first strand
Strand 2
A
392 395anti-parallel
Strand 3
A
398 400anti-parallel
Strand 4
A
529 534anti-parallel
Strand 5
A
540 545anti-parallel
Strand 6
A
556 565anti-parallel
Strand 7
A
586 591anti-parallel
Strand 8
A
577 583anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
386 387first strand
Strand 2
A
392 395anti-parallel
Strand 3
A
398 400anti-parallel
Strand 4
A
529 534anti-parallel
Strand 5
A
540 545anti-parallel
Strand 6
A
556 565anti-parallel
Strand 7
A
594 597anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
663 664first strand
Strand 2
A
1230 1232anti-parallel
Strand 3
A
1051 1059anti-parallel
Strand 4
A
1189 1197anti-parallel
Strand 5
A
1177 1184anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
716 718first strand
Strand 2
A
709 711anti-parallel
Strand 3
A
2096 2103parallel
Strand 4
A
2083 2090anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
727 728first strand
Strand 2
A
735 736anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
842 847first strand
Strand 2
A
905 910anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
871 872first strand
Strand 2
A
887 888parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
959 962first strand
Strand 2
A
944 949anti-parallel
Strand 3
A
1102 1104parallel
Strand 4
A
1136 1138anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1236 1238first strand
Strand 2
A
1241 1244anti-parallel
Strand 3
A
1247 1249anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1594 1600first strand
Strand 2
A
1735 1740anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1606 1608first strand
Strand 2
A
1709 1711anti-parallel
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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1800 1801first strand
Strand 2
A
1796 1797anti-parallel
Strand 3
A
2021 2022anti-parallel
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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1844 1847first strand
Strand 2
A
1860 1867anti-parallel
Strand 3
A
1870 1877anti-parallel
Strand 4
A
1880 1888anti-parallel
Strand 5
A
1966 1975parallel
Strand 6
A
1925 1931anti-parallel
Strand 7
A
1937 1943anti-parallel
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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1999 2000first strand
Strand 2
A
2008 2009anti-parallel
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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2027 2028first strand
Strand 2
A
2031 2032anti-parallel
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