Analysis of interatomic Contacts of Structural Units in PDB entry:
7ORM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7ORM entry

There are 4 chains in PDB entry 7ORM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
H
 A 1 C 14
T
 A 15 U 25
P
 U 7 A 21
A
 MET 1MET 2251
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 95 helices in PDB entry 7ORM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 16Right-handed alpha
Helix 2
AA2
A
18 46Right-handed alpha
Helix 3
AA3
A
54 63Right-handed alpha
Helix 4
AA4
A
99 121Right-handed alpha
Helix 5
AA5
A
142 149Right-handed alpha
Helix 6
AA6
A
159 172Right-handed alpha
Helix 7
AA7
A
175 183Right-handed alpha
Helix 8
AA8
A
200 203Right-handed 310
Helix 9
AA9
A
204 214Right-handed alpha
Helix 10
AB1
A
215 227Right-handed alpha
Helix 11
AB2
A
237 262Right-handed alpha
Helix 12
AB3
A
263 265Right-handed 310
Helix 13
AB4
A
273 292Right-handed alpha
Helix 14
AB5
A
297 301Right-handed 310
Helix 15
AB6
A
319 333Right-handed alpha
Helix 16
AB7
A
340 351Right-handed alpha
Helix 17
AB8
A
357 373Right-handed alpha
Helix 18
AB9
A
407 417Right-handed alpha
Helix 19
AC1
A
447 466Right-handed alpha
Helix 20
AC2
A
475 489Right-handed alpha
Helix 21
AC3
A
489 502Right-handed alpha
Helix 22
AC4
A
502 523Right-handed alpha
Helix 23
AC5
A
598 620Right-handed alpha
Helix 24
AC6
A
626 639Right-handed alpha
Helix 25
AC7
A
642 661Right-handed alpha
Helix 26
AC8
A
665 673Right-handed alpha
Helix 27
AC9
A
680 700Right-handed alpha
Helix 28
AD1
A
737 747Right-handed alpha
Helix 29
AD2
A
748 752Right-handed 310
Helix 30
AD3
A
758 780Right-handed alpha
Helix 31
AD4
A
795 814Right-handed alpha
Helix 32
AD5
A
816 825Right-handed alpha
Helix 33
AD6
A
830 838Right-handed 310
Helix 34
AD7
A
849 854Right-handed alpha
Helix 35
AD8
A
893 900Right-handed alpha
Helix 36
AD9
A
911 921Right-handed alpha
Helix 37
AE1
A
928 940Right-handed alpha
Helix 38
AE2
A
964 983Right-handed alpha
Helix 39
AE3
A
996 1020Right-handed alpha
Helix 40
AE4
A
1020 1028Right-handed alpha
Helix 41
AE5
A
1043 1049Right-handed alpha
Helix 42
AE6
A
1070 1079Right-handed alpha
Helix 43
AE7
A
1084 1099Right-handed alpha
Helix 44
AE8
A
1106 1115Right-handed alpha
Helix 45
AE9
A
1123 1129Right-handed alpha
Helix 46
AF1
A
1148 1174Right-handed alpha
Helix 47
AF2
A
1201 1220Right-handed alpha
Helix 48
AF3
A
1252 1258Right-handed alpha
Helix 49
AF4
A
1259 1261Right-handed 310
Helix 50
AF5
A
1267 1285Right-handed alpha
Helix 51
AF6
A
1288 1307Right-handed alpha
Helix 52
AF7
A
1317 1321Right-handed 310
Helix 53
AF8
A
1330 1334Right-handed 310
Helix 54
AF9
A
1340 1348Right-handed alpha
Helix 55
AG1
A
1350 1365Right-handed alpha
Helix 56
AG2
A
1373 1380Right-handed alpha
Helix 57
AG3
A
1381 1384Right-handed 310
Helix 58
AG4
A
1390 1403Right-handed alpha
Helix 59
AG5
A
1418 1422Right-handed 310
Helix 60
AG6
A
1441 1453Right-handed alpha
Helix 61
AG7
A
1455 1467Right-handed alpha
Helix 62
AG8
A
1468 1472Right-handed 310
Helix 63
AG9
A
1477 1489Right-handed alpha
Helix 64
AH1
A
1491 1499Right-handed alpha
Helix 65
AH2
A
1502 1513Right-handed alpha
Helix 66
AH3
A
1521 1528Right-handed alpha
Helix 67
AH4
A
1548 1563Right-handed alpha
Helix 68
AH5
A
1566 1578Right-handed alpha
Helix 69
AH6
A
1581 1593Right-handed alpha
Helix 70
AH7
A
1622 1632Right-handed alpha
Helix 71
AH8
A
1641 1660Right-handed alpha
Helix 72
AH9
A
1660 1677Right-handed alpha
Helix 73
AI1
A
1680 1700Right-handed alpha
Helix 74
AI2
A
1717 1729Right-handed alpha
Helix 75
AI3
A
1760 1779Right-handed alpha
Helix 76
AI4
A
1783 1795Right-handed alpha
Helix 77
AI5
A
1802 1811Right-handed alpha
Helix 78
AI6
A
1818 1825Right-handed alpha
Helix 79
AI7
A
1830 1841Right-handed alpha
Helix 80
AI8
A
1892 1904Right-handed alpha
Helix 81
AI9
A
1944 1954Right-handed alpha
Helix 82
AJ1
A
1983 1991Right-handed alpha
Helix 83
AJ2
A
2014 2019Right-handed 310
Helix 84
AJ3
A
2033 2039Right-handed alpha
Helix 85
AJ4
A
2046 2052Right-handed alpha
Helix 86
AJ5
A
2054 2059Right-handed alpha
Helix 87
AJ6
A
2060 2062Right-handed 310
Helix 88
AJ7
A
2069 2075Right-handed alpha
Helix 89
AJ8
A
2109 2127Right-handed alpha
Helix 90
AJ9
A
2138 2155Right-handed alpha
Helix 91
AK1
A
2158 2175Right-handed alpha
Helix 92
AK2
A
2177 2183Right-handed alpha
Helix 93
AK3
A
2200 2210Right-handed alpha
Helix 94
AK4
A
2216 2238Right-handed alpha
Helix 95
AK5
A
2246 2251Right-handed alpha
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There are 17 sheets in PDB entry 7ORM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 84first strand
Strand 2
A
87 95anti-parallel
Strand 3
A
124 131parallel
Strand 4
A
138 140anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
293 295first strand
Strand 2
A
441 443parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
386 387first strand
Strand 2
A
392 395anti-parallel
Strand 3
A
398 400anti-parallel
Strand 4
A
529 534anti-parallel
Strand 5
A
540 544anti-parallel
Strand 6
A
556 565anti-parallel
Strand 7
A
586 591anti-parallel
Strand 8
A
577 583anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
386 387first strand
Strand 2
A
392 395anti-parallel
Strand 3
A
398 400anti-parallel
Strand 4
A
529 534anti-parallel
Strand 5
A
540 544anti-parallel
Strand 6
A
556 565anti-parallel
Strand 7
A
594 597anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
716 717first strand
Strand 2
A
709 711anti-parallel
Strand 3
A
2097 2103parallel
Strand 4
A
2083 2089anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
727 728first strand
Strand 2
A
735 736anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
842 846first strand
Strand 2
A
906 910anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
959 962first strand
Strand 2
A
944 949anti-parallel
Strand 3
A
1101 1104parallel
Strand 4
A
1136 1139anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1177 1184first strand
Strand 2
A
1188 1197anti-parallel
Strand 3
A
1051 1060anti-parallel
Strand 4
A
1230 1232anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1236 1237first strand
Strand 2
A
1242 1243anti-parallel
Strand 3
A
1248 1249anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1519 1520first strand
Strand 2
A
1546 1547anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1594 1596first strand
Strand 2
A
1738 1740anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1606 1609first strand
Strand 2
A
1708 1711anti-parallel
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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1800 1801first strand
Strand 2
A
1796 1797anti-parallel
Strand 3
A
2021 2022anti-parallel
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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1865 1867first strand
Strand 2
A
1870 1876anti-parallel
Strand 3
A
1881 1888anti-parallel
Strand 4
A
1965 1975parallel
Strand 5
A
1925 1932anti-parallel
Strand 6
A
1936 1943anti-parallel
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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1999 2000first strand
Strand 2
A
2008 2009anti-parallel
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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2027 2028first strand
Strand 2
A
2031 2032anti-parallel
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