Analysis of interatomic Contacts of Structural Units in PDB entry:
7OT1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7OT1 entry

There are 2 chains in PDB entry 7OT1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 1016	TYR 1512
B	GLY 1015	TYR 1512

There are 30 helices in PDB entry 7OT1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1023	1035	Right-handed alpha
Helix 2	AA2	A	1050	1069	Right-handed alpha
Helix 3	AA3	A	1084	1088	Right-handed alpha
Helix 4	AA4	A	1090	1096	Right-handed alpha
Helix 5	AA5	A	1097	1100	Right-handed 310
Helix 6	AA6	A	1122	1134	Right-handed alpha
Helix 7	AA7	A	1136	1140	Right-handed 310
Helix 8	AA8	A	1178	1200	Right-handed alpha
Helix 9	AA9	A	1246	1253	Right-handed alpha
Helix 10	AB1	A	1277	1288	Right-handed alpha
Helix 11	AB2	A	1319	1337	Right-handed alpha
Helix 12	AB3	A	1350	1361	Right-handed alpha
Helix 13	AB4	A	1370	1376	Right-handed alpha
Helix 14	AB5	A	1396	1423	Right-handed alpha
Helix 15	AB6	A	1429	1438	Right-handed alpha
Helix 16	AB7	A	1450	1462	Right-handed alpha
Helix 17	AB8	B	1023	1035	Right-handed alpha
Helix 18	AB9	B	1050	1070	Right-handed alpha
Helix 19	AC1	B	1083	1088	Right-handed alpha
Helix 20	AC2	B	1090	1098	Right-handed alpha
Helix 21	AC3	B	1122	1134	Right-handed alpha
Helix 22	AC4	B	1178	1199	Right-handed alpha
Helix 23	AC5	B	1248	1253	Right-handed alpha
Helix 24	AC6	B	1277	1288	Right-handed alpha
Helix 25	AC7	B	1316	1337	Right-handed alpha
Helix 26	AC8	B	1350	1361	Right-handed alpha
Helix 27	AC9	B	1370	1375	Right-handed alpha
Helix 28	AD1	B	1399	1423	Right-handed alpha
Helix 29	AD2	B	1429	1438	Right-handed alpha
Helix 30	AD3	B	1450	1461	Right-handed alpha

There are 9 sheets in PDB entry 7OT1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1038	1040	first strand
Strand 2	A	1047	1049	anti-parallel

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There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1074	1075	first strand
Strand 2	A	1142	1151	parallel
Strand 3	A	1166	1176	anti-parallel
Strand 4	A	1269	1276	anti-parallel
Strand 5	A	1234	1245	anti-parallel
Strand 6	A	1221	1229	anti-parallel
Strand 7	A	1206	1209	anti-parallel
Strand 8	A	1477	1482	anti-parallel
Strand 9	A	1504	1509	anti-parallel
Strand 10	A	1442	1447	anti-parallel
Strand 11	A	1424	1426	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1081	1083	first strand
Strand 2	A	1110	1118	anti-parallel
Strand 3	A	1102	1107	anti-parallel
Strand 4	B	1102	1107	anti-parallel
Strand 5	B	1110	1118	anti-parallel
Strand 6	B	1081	1082	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1255	1257	first strand
Strand 2	A	1265	1267	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1341	1343	first strand
Strand 2	A	1304	1308	parallel
Strand 3	A	1365	1369	parallel
Strand 4	A	1378	1383	anti-parallel
Strand 5	A	1389	1393	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1038	1040	first strand
Strand 2	B	1047	1049	anti-parallel

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There are 11 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1074	1075	first strand
Strand 2	B	1142	1151	parallel
Strand 3	B	1166	1176	anti-parallel
Strand 4	B	1269	1276	anti-parallel
Strand 5	B	1235	1245	anti-parallel
Strand 6	B	1221	1228	anti-parallel
Strand 7	B	1206	1209	anti-parallel
Strand 8	B	1477	1482	anti-parallel
Strand 9	B	1504	1509	anti-parallel
Strand 10	B	1442	1447	anti-parallel
Strand 11	B	1424	1426	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1255	1257	first strand
Strand 2	B	1265	1267	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1341	1343	first strand
Strand 2	B	1304	1308	parallel
Strand 3	B	1365	1369	parallel
Strand 4	B	1379	1383	anti-parallel
Strand 5	B	1389	1392	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7OT1

Analysis of interatomic Contacts of Structural Units in PDB entry:
7OT1