Analysis of interatomic Contacts of Structural Units in PDB entry:
7OTE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7OTE entry

There are 2 chains in PDB entry 7OTE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 261LEU 536
B
 ASP 261LEU 536
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 7OTE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
305 310Right-handed alpha
Helix 2
AA2
A
311 320Right-handed alpha
Helix 3
AA3
A
349 355Right-handed alpha
Helix 4
AA4
A
356 360Right-handed 310
Helix 5
AA5
A
362 383Right-handed alpha
Helix 6
AA6
A
391 393Right-handed 310
Helix 7
AA7
A
399 401Right-handed 310
Helix 8
AA8
A
428 432Right-handed 310
Helix 9
AA9
A
433 440Right-handed alpha
Helix 10
AB1
A
443 461Right-handed alpha
Helix 11
AB2
A
470 480Right-handed alpha
Helix 12
AB3
A
491 502Right-handed alpha
Helix 13
AB4
A
505 509Right-handed 310
Helix 14
AB5
A
511 521Right-handed alpha
Helix 15
AB6
A
521 526Right-handed alpha
Helix 16
AB7
B
266 270Right-handed 310
Helix 17
AB8
B
306 320Right-handed alpha
Helix 18
AB9
B
349 355Right-handed alpha
Helix 19
AC1
B
356 361Right-handed 310
Helix 20
AC2
B
362 383Right-handed alpha
Helix 21
AC3
B
391 393Right-handed 310
Helix 22
AC4
B
399 401Right-handed 310
Helix 23
AC5
B
428 432Right-handed 310
Helix 24
AC6
B
433 440Right-handed alpha
Helix 25
AC7
B
443 460Right-handed alpha
Helix 26
AC8
B
470 480Right-handed alpha
Helix 27
AC9
B
491 502Right-handed alpha
Helix 28
AD1
B
505 509Right-handed 310
Helix 29
AD2
B
511 526Right-handed alpha
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There are 4 sheets in PDB entry 7OTE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 278first strand
Strand 2
A
282 289anti-parallel
Strand 3
A
295 300anti-parallel
Strand 4
A
338 342anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 348first strand
Strand 2
A
395 397anti-parallel
Strand 3
A
403 405anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
274 275first strand
Strand 2
B
282 289anti-parallel
Strand 3
B
293 300anti-parallel
Strand 4
B
338 341anti-parallel
Strand 5
B
328 332anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
347 348first strand
Strand 2
B
395 397anti-parallel
Strand 3
B
403 405anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il