Analysis of interatomic Contacts of Structural Units in PDB entry:
7OTI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7OTI entry

There is 1 chain in PDB entry 7OTI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 33ALA 1271
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 7OTI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
34 41Right-handed 310
Helix 2
AA2
A
44 86Right-handed alpha
Helix 3
AA3
A
91 134Right-handed alpha
Helix 4
AA4
A
136 152Right-handed alpha
Helix 5
AA5
A
155 160Right-handed alpha
Helix 6
AA6
A
165 181Right-handed alpha
Helix 7
AA7
A
183 207Right-handed alpha
Helix 8
AA8
A
207 256Right-handed alpha
Helix 9
AA9
A
256 263Right-handed alpha
Helix 10
AB1
A
264 269Right-handed 310
Helix 11
AB2
A
270 315Right-handed alpha
Helix 12
AB3
A
328 363Right-handed alpha
Helix 13
AB4
A
428 436Right-handed alpha
Helix 14
AB5
A
458 465Right-handed alpha
Helix 15
AB6
A
479 486Right-handed alpha
Helix 16
AB7
A
492 503Right-handed alpha
Helix 17
AB8
A
505 511Right-handed alpha
Helix 18
AB9
A
514 518Right-handed 310
Helix 19
AC1
A
528 542Right-handed alpha
Helix 20
AC2
A
558 573Right-handed alpha
Helix 21
AC3
A
584 590Right-handed alpha
Helix 22
AC4
A
607 615Right-handed alpha
Helix 23
AC5
A
616 623Right-handed alpha
Helix 24
AC6
A
694 699Right-handed alpha
Helix 25
AC7
A
699 704Right-handed alpha
Helix 26
AC8
A
709 737Right-handed alpha
Helix 27
AC9
A
742 757Right-handed alpha
Helix 28
AD1
A
758 793Right-handed alpha
Helix 29
AD2
A
807 838Right-handed alpha
Helix 30
AD3
A
838 846Right-handed alpha
Helix 31
AD4
A
851 889Right-handed alpha
Helix 32
AD5
A
890 895Right-handed alpha
Helix 33
AD6
A
899 905Right-handed 310
Helix 34
AD7
A
906 920Right-handed alpha
Helix 35
AD8
A
920 955Right-handed alpha
Helix 36
AD9
A
958 964Right-handed alpha
Helix 37
AE1
A
969 1010Right-handed alpha
Helix 38
AE2
A
1023 1027Right-handed 310
Helix 39
AE3
A
1042 1046Right-handed 310
Helix 40
AE4
A
1071 1080Right-handed alpha
Helix 41
AE5
A
1096 1100Right-handed 310
Helix 42
AE6
A
1101 1106Right-handed alpha
Helix 43
AE7
A
1122 1128Right-handed alpha
Helix 44
AE8
A
1137 1148Right-handed alpha
Helix 45
AE9
A
1151 1156Right-handed alpha
Helix 46
AF1
A
1159 1163Right-handed 310
Helix 47
AF2
A
1173 1187Right-handed alpha
Helix 48
AF3
A
1204 1215Right-handed alpha
Helix 49
AF4
A
1229 1235Right-handed alpha
Helix 50
AF5
A
1253 1257Right-handed alpha
Helix 51
AF6
A
1261 1269Right-handed alpha
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There are 6 sheets in PDB entry 7OTI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
406 409first strand
Strand 2
A
389 395anti-parallel
Strand 3
A
444 448anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
579 580first strand
Strand 2
A
419 422parallel
Strand 3
A
594 598parallel
Strand 4
A
601 606anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
466 468first strand
Strand 2
A
547 549parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1049 1055first strand
Strand 2
A
1032 1038anti-parallel
Strand 3
A
1087 1091anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1192 1195first strand
Strand 2
A
1222 1225parallel
Strand 3
A
1060 1065parallel
Strand 4
A
1238 1243parallel
Strand 5
A
1246 1252anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1120 1121first strand
Strand 2
A
1166 1167anti-parallel
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