Analysis of interatomic Contacts of Structural Units in PDB entry:
7OTJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7OTJ entry

There are 4 chains in PDB entry 7OTJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 366	SER 878
B	MET 366	GLU 881
C	T 1	T 6
D	T 1	T 6

There are 44 helices in PDB entry 7OTJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	370	382	Right-handed alpha
Helix 2	AA2	A	395	411	Right-handed alpha
Helix 3	AA3	A	421	427	Right-handed alpha
Helix 4	AA4	A	433	438	Right-handed alpha
Helix 5	AA5	A	445	456	Right-handed alpha
Helix 6	AA6	A	456	466	Right-handed alpha
Helix 7	AA7	A	474	477	Right-handed 310
Helix 8	AA8	A	478	494	Right-handed alpha
Helix 9	AA9	A	497	502	Right-handed 310
Helix 10	AB1	A	534	537	Right-handed 310
Helix 11	AB2	A	538	545	Right-handed alpha
Helix 12	AB3	A	560	570	Right-handed alpha
Helix 13	AB4	A	576	585	Right-handed alpha
Helix 14	AB5	A	586	588	Right-handed 310
Helix 15	AB6	A	604	619	Right-handed alpha
Helix 16	AB7	A	637	645	Right-handed alpha
Helix 17	AB8	A	754	760	Right-handed alpha
Helix 18	AB9	A	817	821	Right-handed alpha
Helix 19	AC1	A	839	847	Right-handed alpha
Helix 20	AC2	A	850	852	Right-handed 310
Helix 21	AC3	A	860	864	Right-handed 310
Helix 22	AC4	A	867	877	Right-handed alpha
Helix 23	AC5	B	370	382	Right-handed alpha
Helix 24	AC6	B	395	409	Right-handed alpha
Helix 25	AC7	B	421	427	Right-handed alpha
Helix 26	AC8	B	433	438	Right-handed alpha
Helix 27	AC9	B	445	456	Right-handed alpha
Helix 28	AD1	B	456	466	Right-handed alpha
Helix 29	AD2	B	473	477	Right-handed 310
Helix 30	AD3	B	478	494	Right-handed alpha
Helix 31	AD4	B	497	502	Right-handed 310
Helix 32	AD5	B	534	537	Right-handed 310
Helix 33	AD6	B	538	545	Right-handed alpha
Helix 34	AD7	B	560	571	Right-handed alpha
Helix 35	AD8	B	576	585	Right-handed alpha
Helix 36	AD9	B	586	588	Right-handed 310
Helix 37	AE1	B	604	619	Right-handed alpha
Helix 38	AE2	B	635	643	Right-handed alpha
Helix 39	AE3	B	644	646	Right-handed 310
Helix 40	AE4	B	817	821	Right-handed alpha
Helix 41	AE5	B	839	847	Right-handed alpha
Helix 42	AE6	B	850	852	Right-handed 310
Helix 43	AE7	B	860	864	Right-handed 310
Helix 44	AE8	B	867	880	Right-handed alpha

There are 10 sheets in PDB entry 7OTJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	431	432	first strand
Strand 2	A	415	419	parallel
Strand 3	A	468	472	parallel
Strand 4	A	503	508	parallel
Strand 5	A	386	390	parallel
Strand 6	A	547	551	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	814	816	first strand
Strand 2	A	599	602	parallel
Strand 3	A	828	831	parallel
Strand 4	A	854	857	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	624	627	first strand
Strand 2	A	651	654	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	629	632	first strand
Strand 2	A	800	806	anti-parallel
Strand 3	A	789	794	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	781	785	first strand
Strand 2	A	769	774	anti-parallel
Strand 3	A	675	681	anti-parallel
Strand 4	A	659	662	anti-parallel
Strand 5	A	809	811	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	431	432	first strand
Strand 2	B	415	419	parallel
Strand 3	B	468	472	parallel
Strand 4	B	503	507	parallel
Strand 5	B	386	390	parallel
Strand 6	B	548	551	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	814	816	first strand
Strand 2	B	599	602	parallel
Strand 3	B	828	831	parallel
Strand 4	B	854	857	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	624	627	first strand
Strand 2	B	651	654	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	781	785	first strand
Strand 2	B	768	774	anti-parallel
Strand 3	B	675	682	anti-parallel
Strand 4	B	659	662	anti-parallel
Strand 5	B	809	811	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	789	790	first strand
Strand 2	B	805	806	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7OTJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
7OTJ