Analysis of interatomic Contacts of Structural Units in PDB entry:
7OTO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7OTO entry

There are 2 chains in PDB entry 7OTO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ASP 130ILE 799
A
 HIS 10SER 800
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 54 helices in PDB entry 7OTO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
162 174Right-handed alpha
Helix 2
AA2
B
186 191Right-handed 310
Helix 3
AA3
B
200 204Right-handed 310
Helix 4
AA4
B
205 218Right-handed alpha
Helix 5
AA5
B
230 248Right-handed alpha
Helix 6
AA6
B
251 255Right-handed 310
Helix 7
AA7
B
270 278Right-handed alpha
Helix 8
AA8
B
290 296Right-handed alpha
Helix 9
AA9
B
300 313Right-handed alpha
Helix 10
AB1
B
317 331Right-handed alpha
Helix 11
AB2
B
334 346Right-handed alpha
Helix 12
AB3
B
348 357Right-handed alpha
Helix 13
AB4
B
361 385Right-handed alpha
Helix 14
AB5
B
387 398Right-handed alpha
Helix 15
AB6
B
400 411Right-handed alpha
Helix 16
AB7
B
430 441Right-handed alpha
Helix 17
AB8
B
512 536Right-handed alpha
Helix 18
AB9
B
538 566Right-handed alpha
Helix 19
AC1
B
585 592Right-handed alpha
Helix 20
AC2
B
619 636Right-handed alpha
Helix 21
AC3
B
668 684Right-handed alpha
Helix 22
AC4
B
700 718Right-handed alpha
Helix 23
AC5
B
731 733Right-handed 310
Helix 24
AC6
B
734 739Right-handed alpha
Helix 25
AC7
B
771 780Right-handed alpha
Helix 26
AC8
B
782 799Right-handed alpha
Helix 27
AC9
A
11 24Right-handed alpha
Helix 28
AD1
A
41 52Right-handed alpha
Helix 29
AD2
A
75 87Right-handed alpha
Helix 30
AD3
A
162 174Right-handed alpha
Helix 31
AD4
A
200 204Right-handed 310
Helix 32
AD5
A
205 218Right-handed alpha
Helix 33
AD6
A
230 249Right-handed alpha
Helix 34
AD7
A
270 277Right-handed alpha
Helix 35
AD8
A
290 296Right-handed alpha
Helix 36
AD9
A
300 313Right-handed alpha
Helix 37
AE1
A
317 332Right-handed alpha
Helix 38
AE2
A
334 346Right-handed alpha
Helix 39
AE3
A
347 358Right-handed alpha
Helix 40
AE4
A
361 385Right-handed alpha
Helix 41
AE5
A
387 398Right-handed alpha
Helix 42
AE6
A
400 411Right-handed alpha
Helix 43
AE7
A
418 422Right-handed 310
Helix 44
AE8
A
430 442Right-handed alpha
Helix 45
AE9
A
513 536Right-handed alpha
Helix 46
AF1
A
538 566Right-handed alpha
Helix 47
AF2
A
585 592Right-handed alpha
Helix 48
AF3
A
619 635Right-handed alpha
Helix 49
AF4
A
668 684Right-handed alpha
Helix 50
AF5
A
700 718Right-handed alpha
Helix 51
AF6
A
729 733Right-handed 310
Helix 52
AF7
A
734 739Right-handed alpha
Helix 53
AF8
A
771 780Right-handed alpha
Helix 54
AF9
A
782 800Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 7OTO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
132 138first strand
Strand 2
B
143 149anti-parallel
Strand 3
B
154 158anti-parallel
Strand 4
B
258 260parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
178 181first strand
Strand 2
B
196 199parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
570 572first strand
Strand 2
B
644 647parallel
Strand 3
B
578 583anti-parallel
Strand 4
B
599 603anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
653 656first strand
Strand 2
B
689 693parallel
Strand 3
B
722 726parallel
Strand 4
B
609 613parallel
Strand 5
B
742 751parallel
Strand 6
B
756 764anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 58first strand
Strand 2
A
66 72anti-parallel
Strand 3
A
36 40anti-parallel
Strand 4
A
28 33anti-parallel
Strand 5
A
90 94parallel
Strand 6
A
109 114anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
196 199first strand
Strand 2
A
177 181parallel
Strand 3
A
133 138parallel
Strand 4
A
143 148anti-parallel
Strand 5
A
155 158anti-parallel
Strand 6
A
259 260parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
571 572first strand
Strand 2
A
644 647parallel
Strand 3
A
578 583anti-parallel
Strand 4
A
599 603anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
653 656first strand
Strand 2
A
689 693parallel
Strand 3
A
722 726parallel
Strand 4
A
609 612parallel
Strand 5
A
742 752parallel
Strand 6
A
755 764anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il