Analysis of interatomic Contacts of Structural Units in PDB entry:
7OVO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7OVO entry

There are 2 chains in PDB entry 7OVO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2MET 414
C
 GLU 11LEU 402
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 35 helices in PDB entry 7OVO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
46 53Right-handed alpha
Helix 2
AA2
A
64 68Right-handed alpha
Helix 3
AA3
A
70 78Right-handed alpha
Helix 4
AA4
A
79 85Right-handed alpha
Helix 5
AA5
A
125 137Right-handed alpha
Helix 6
AA6
A
158 180Right-handed alpha
Helix 7
AA7
A
182 187Right-handed 310
Helix 8
AA8
A
198 210Right-handed alpha
Helix 9
AA9
A
229 243Right-handed alpha
Helix 10
AB1
A
256 265Right-handed alpha
Helix 11
AB2
A
273 282Right-handed alpha
Helix 12
AB3
A
337 341Right-handed 310
Helix 13
AB4
A
353 359Right-handed alpha
Helix 14
AB5
A
360 370Right-handed alpha
Helix 15
AB6
A
372 401Right-handed alpha
Helix 16
AB7
A
402 412Right-handed alpha
Helix 17
AB8
C
48 55Right-handed alpha
Helix 18
AB9
C
58 66Right-handed alpha
Helix 19
AC1
C
73 80Right-handed alpha
Helix 20
AC2
C
82 89Right-handed alpha
Helix 21
AC3
C
90 97Right-handed alpha
Helix 22
AC4
C
113 117Right-handed 310
Helix 23
AC5
C
139 151Right-handed alpha
Helix 24
AC6
C
169 189Right-handed alpha
Helix 25
AC7
C
206 218Right-handed alpha
Helix 26
AC8
C
235 250Right-handed alpha
Helix 27
AC9
C
263 273Right-handed alpha
Helix 28
AD1
C
285 289Right-handed 310
Helix 29
AD2
C
303 307Right-handed 310
Helix 30
AD3
C
319 325Right-handed alpha
Helix 31
AD4
C
326 337Right-handed alpha
Helix 32
AD5
C
337 366Right-handed alpha
Helix 33
AD6
C
368 381Right-handed alpha
Helix 34
AD7
C
383 387Right-handed 310
Helix 35
AD8
C
388 397Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 7OVO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 9first strand
Strand 2
A
12 17anti-parallel
Strand 3
A
28 30anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 36first strand
Strand 2
A
59 63parallel
Strand 3
A
91 95parallel
Strand 4
A
140 142parallel
Strand 5
A
188 193parallel
Strand 6
A
216 219parallel
Strand 7
A
249 251parallel
Strand 8
A
270 272parallel
Strand 9
A
32 36parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 116first strand
Strand 2
A
121 124anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
284 286first strand
Strand 2
A
332 334anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
17 22first strand
Strand 2
C
29 35anti-parallel
Strand 3
C
38 42anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
44 45first strand
Strand 2
C
277 278parallel
Strand 3
C
256 258parallel
Strand 4
C
224 227parallel
Strand 5
C
196 201parallel
Strand 6
C
154 156parallel
Strand 7
C
101 104parallel
Strand 8
C
69 72parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
125 127first strand
Strand 2
C
136 138anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
291 294first strand
Strand 2
C
297 300anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il