Analysis of interatomic Contacts of Structural Units in PDB entry:
7OXL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7OXL entry

There is 1 chain in PDB entry 7OXL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 3SER 490
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 7OXL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 26Right-handed alpha
Helix 2
AA2
A
67 76Right-handed alpha
Helix 3
AA3
A
112 134Right-handed alpha
Helix 4
AA4
A
141 163Right-handed alpha
Helix 5
AA5
A
167 188Right-handed alpha
Helix 6
AA6
A
219 229Right-handed alpha
Helix 7
AA7
A
231 233Right-handed 310
Helix 8
AA8
A
277 288Right-handed alpha
Helix 9
AA9
A
294 304Right-handed alpha
Helix 10
AB1
A
332 336Right-handed 310
Helix 11
AB2
A
344 352Right-handed 310
Helix 12
AB3
A
360 365Right-handed alpha
Helix 13
AB4
A
374 383Right-handed alpha
Helix 14
AB5
A
384 401Right-handed alpha
Helix 15
AB6
A
434 443Right-handed alpha
Helix 16
AB7
A
445 448Right-handed 310
Helix 17
AB8
A
454 458Right-handed 310
Helix 18
AB9
A
464 490Right-handed alpha
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There are 5 sheets in PDB entry 7OXL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
235 236first strand
Strand 2
A
31 34parallel
Strand 3
A
7 10parallel
Strand 4
A
271 274parallel
Strand 5
A
450 452parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 49first strand
Strand 2
A
52 55anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 105first strand
Strand 2
A
325 331parallel
Strand 3
A
354 357anti-parallel
Strand 4
A
366 373anti-parallel
Strand 5
A
309 316anti-parallel
Strand 6
A
410 413anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
266 269first strand
Strand 2
A
257 261anti-parallel
Strand 3
A
241 245anti-parallel
Strand 4
A
289 290parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
305 307first strand
Strand 2
A
426 428anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il