Analysis of interatomic Contacts of Structural Units in PDB entry:
7OY8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7OY8 entry

There are 35 chains in PDB entry 7OY8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
1	ILE 12	TYR 55
2	TRP 2	THR 46
3	ILE 12	TYR 55
4	TRP 2	LYS 47
5	ILE 12	TYR 55
6	TRP 2	LYS 47
7	ILE 12	TYR 55
8	TRP 2	PRO 48
9	SER 10	TYR 55
A	TRP 2	THR 46
D	TRP 2	LYS 47
E	TRP 2	THR 46
F	TRP 2	LYS 47
G	TRP 2	LYS 47
H	MET 1	VAL 257
I	ILE 12	TYR 55
J	TRP 2	THR 46
K	GLY 11	TYR 55
L	ALA 2	HIS 275
M	SER 2	PRO 306
N	TRP 2	THR 46
O	ILE 12	TYR 55
Q	LEU 9	TYR 55
R	TRP 2	LYS 47
S	GLY 11	TYR 55
T	TRP 2	LYS 47
U	ILE 12	TYR 55
V	TRP 2	THR 46
W	ILE 12	TYR 55
X	TRP 2	LYS 47
Y	THR 13	TYR 55
Z	TRP 2	LYS 47
d	ILE 12	TYR 55
m	GLY 11	TYR 55
n	ILE 12	TYR 55

There are 92 helices in PDB entry 7OY8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	1	13	46	Right-handed alpha
Helix 2	AA2	2	3	8	Right-handed alpha
Helix 3	AA3	2	9	35	Right-handed alpha
Helix 4	AA4	3	13	46	Right-handed alpha
Helix 5	AA5	4	3	8	Right-handed alpha
Helix 6	AA6	4	9	35	Right-handed alpha
Helix 7	AA7	5	13	46	Right-handed alpha
Helix 8	AA8	6	3	8	Right-handed alpha
Helix 9	AA9	6	9	34	Right-handed alpha
Helix 10	AB1	7	13	46	Right-handed alpha
Helix 11	AB2	8	1	5	Right-handed 310
Helix 12	AB3	8	9	34	Right-handed alpha
Helix 13	AB4	9	13	46	Right-handed alpha
Helix 14	AB5	A	3	8	Right-handed alpha
Helix 15	AB6	A	9	35	Right-handed alpha
Helix 16	AB7	D	3	8	Right-handed alpha
Helix 17	AB8	D	9	35	Right-handed alpha
Helix 18	AB9	E	3	8	Right-handed alpha
Helix 19	AC1	E	9	35	Right-handed alpha
Helix 20	AC2	F	3	8	Right-handed alpha
Helix 21	AC3	F	9	34	Right-handed alpha
Helix 22	AC4	G	3	8	Right-handed alpha
Helix 23	AC5	G	9	35	Right-handed alpha
Helix 24	AC6	H	1	5	Right-handed 310
Helix 25	AC7	H	11	36	Right-handed alpha
Helix 26	AC8	H	57	62	Right-handed alpha
Helix 27	AC9	H	106	111	Right-handed alpha
Helix 28	AD1	H	112	116	Right-handed 310
Helix 29	AD2	H	138	140	Right-handed 310
Helix 30	AD3	H	200	202	Right-handed 310
Helix 31	AD4	H	219	226	Right-handed 310
Helix 32	AD5	H	236	249	Right-handed alpha
Helix 33	AD6	H	249	254	Right-handed alpha
Helix 34	AD7	I	13	46	Right-handed alpha
Helix 35	AD8	J	3	8	Right-handed alpha
Helix 36	AD9	J	9	34	Right-handed alpha
Helix 37	AE1	K	13	46	Right-handed alpha
Helix 38	AE2	L	7	11	Right-handed 310
Helix 39	AE3	L	19	24	Right-handed 310
Helix 40	AE4	L	33	57	Right-handed alpha
Helix 41	AE5	L	61	65	Right-handed 310
Helix 42	AE6	L	71	75	Right-handed 310
Helix 43	AE7	L	80	83	Right-handed 310
Helix 44	AE8	L	84	113	Right-handed alpha
Helix 45	AE9	L	116	134	Right-handed alpha
Helix 46	AF1	L	134	140	Right-handed alpha
Helix 47	AF2	L	142	146	Right-handed 310
Helix 48	AF3	L	152	165	Right-handed alpha
Helix 49	AF4	L	166	170	Right-handed 310
Helix 50	AF5	L	171	200	Right-handed alpha
Helix 51	AF6	L	209	222	Right-handed alpha
Helix 52	AF7	L	225	252	Right-handed alpha
Helix 53	AF8	L	259	264	Right-handed alpha
Helix 54	AF9	L	264	269	Right-handed alpha
Helix 55	AG1	M	36	43	Right-handed alpha
Helix 56	AG2	M	52	78	Right-handed alpha
Helix 57	AG3	M	81	89	Right-handed alpha
Helix 58	AG4	M	90	92	Right-handed 310
Helix 59	AG5	M	98	102	Right-handed 310
Helix 60	AG6	M	107	110	Right-handed 310
Helix 61	AG7	M	111	139	Right-handed alpha
Helix 62	AG8	M	143	161	Right-handed alpha
Helix 63	AG9	M	161	168	Right-handed alpha
Helix 64	AH1	M	177	192	Right-handed alpha
Helix 65	AH2	M	194	197	Right-handed 310
Helix 66	AH3	M	198	225	Right-handed alpha
Helix 67	AH4	M	226	229	Right-handed 310
Helix 68	AH5	M	232	239	Right-handed alpha
Helix 69	AH6	M	241	256	Right-handed alpha
Helix 70	AH7	M	262	286	Right-handed alpha
Helix 71	AH8	M	292	300	Right-handed alpha
Helix 72	AH9	N	1	7	Right-handed 310
Helix 73	AI1	N	9	35	Right-handed alpha
Helix 74	AI2	O	13	46	Right-handed alpha
Helix 75	AI3	Q	13	46	Right-handed alpha
Helix 76	AI4	R	3	8	Right-handed alpha
Helix 77	AI5	R	9	35	Right-handed alpha
Helix 78	AI6	S	13	46	Right-handed alpha
Helix 79	AI7	T	3	8	Right-handed alpha
Helix 80	AI8	T	9	35	Right-handed alpha
Helix 81	AI9	U	13	46	Right-handed alpha
Helix 82	AJ1	V	3	8	Right-handed alpha
Helix 83	AJ2	V	9	34	Right-handed alpha
Helix 84	AJ3	W	13	46	Right-handed alpha
Helix 85	AJ4	X	3	8	Right-handed alpha
Helix 86	AJ5	X	9	35	Right-handed alpha
Helix 87	AJ6	Y	14	46	Right-handed alpha
Helix 88	AJ7	Z	3	8	Right-handed alpha
Helix 89	AJ8	Z	9	35	Right-handed alpha
Helix 90	AJ9	d	13	46	Right-handed alpha
Helix 91	AK1	m	13	46	Right-handed alpha
Helix 92	AK2	n	13	46	Right-handed alpha

There are 8 sheets in PDB entry 7OY8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	66	69	first strand
Strand 2	H	75	78	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	90	92	first strand
Strand 2	H	101	103	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	134	136	first strand
Strand 2	H	164	174	anti-parallel
Strand 3	H	179	187	anti-parallel
Strand 4	H	194	198	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	134	136	first strand
Strand 2	H	164	174	anti-parallel
Strand 3	H	156	159	anti-parallel
Strand 4	H	212	215	parallel
Strand 5	H	203	205	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	144	145	first strand
Strand 2	M	13	14	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	26	27	first strand
Strand 2	L	30	31	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	29	30	first strand
Strand 2	M	50	51	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	34	35	first strand
Strand 2	M	46	47	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7OY8

Analysis of interatomic Contacts of Structural Units in PDB entry:
7OY8