Analysis of interatomic Contacts of Structural Units in PDB entry:
7OYF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7OYF entry

There are 2 chains in PDB entry 7OYF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLN 508
B
 ASP 44GLU 71
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 7OYF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 35Right-handed alpha
Helix 2
AA2
A
107 130Right-handed alpha
Helix 3
AA3
A
165 180Right-handed alpha
Helix 4
AA4
A
180 185Right-handed alpha
Helix 5
AA5
A
205 207Right-handed 310
Helix 6
AA6
A
250 270Right-handed alpha
Helix 7
AA7
A
281 291Right-handed alpha
Helix 8
AA8
A
309 329Right-handed alpha
Helix 9
AA9
A
333 353Right-handed alpha
Helix 10
AB1
A
354 358Right-handed 310
Helix 11
AB2
A
361 378Right-handed alpha
Helix 12
AB3
A
383 393Right-handed alpha
Helix 13
AB4
A
401 409Right-handed alpha
Helix 14
AB5
A
417 427Right-handed alpha
Helix 15
AB6
A
433 445Right-handed alpha
Helix 16
AB7
A
478 489Right-handed alpha
Helix 17
AB8
A
491 500Right-handed alpha
Helix 18
AB9
A
502 507Right-handed alpha
Helix 19
AC1
B
45 54Right-handed alpha
Helix 20
AC2
B
57 65Right-handed alpha
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There are 5 sheets in PDB entry 7OYF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 242first strand
Strand 2
A
154 161anti-parallel
Strand 3
A
5 10anti-parallel
Strand 4
A
97 101anti-parallel
Strand 5
A
90 94anti-parallel
Strand 6
A
82 84anti-parallel
Strand 7
A
45 47anti-parallel
Strand 8
A
448 452parallel
Strand 9
A
455 458anti-parallel
Strand 10
A
467 470anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 14first strand
Strand 2
A
139 141anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 191first strand
Strand 2
A
197 201anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 214first strand
Strand 2
A
221 225parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
298 300first strand
Strand 2
A
306 308anti-parallel
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