Analysis of interatomic Contacts of Structural Units in PDB entry:
7OYG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7OYG entry

There are 10 chains in PDB entry 7OYG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 31	THR 929
B	ARG 111	ALA 191
C	SER 1	MET 62
P	C 6	G 15
T	U 7	G 18
D	VAL 31	THR 929
E	ARG 111	ALA 191
F	SER 1	MET 62
G	C 6	G 15
H	U 7	G 18

There are 94 helices in PDB entry 7OYG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	123	133	Right-handed alpha
Helix 2	AA2	A	139	149	Right-handed alpha
Helix 3	AA3	A	153	159	Right-handed alpha
Helix 4	AA4	A	170	200	Right-handed alpha
Helix 5	AA5	A	206	210	Right-handed 310
Helix 6	AA6	A	234	249	Right-handed alpha
Helix 7	AA7	A	250	260	Right-handed 310
Helix 8	AA8	A	275	287	Right-handed alpha
Helix 9	AA9	A	297	301	Right-handed 310
Helix 10	AB1	A	303	319	Right-handed alpha
Helix 11	AB2	A	322	326	Right-handed 310
Helix 12	AB3	A	368	377	Right-handed alpha
Helix 13	AB4	A	377	385	Right-handed alpha
Helix 14	AB5	A	416	426	Right-handed alpha
Helix 15	AB6	A	447	455	Right-handed alpha
Helix 16	AB7	A	456	459	Right-handed 310
Helix 17	AB8	A	465	479	Right-handed alpha
Helix 18	AB9	A	489	493	Right-handed 310
Helix 19	AC1	A	505	509	Right-handed 310
Helix 20	AC2	A	511	519	Right-handed alpha
Helix 21	AC3	A	520	532	Right-handed alpha
Helix 22	AC4	A	561	581	Right-handed alpha
Helix 23	AC5	A	596	607	Right-handed alpha
Helix 24	AC6	A	621	626	Right-handed alpha
Helix 25	AC7	A	627	640	Right-handed alpha
Helix 26	AC8	A	641	643	Right-handed 310
Helix 27	AC9	A	647	662	Right-handed alpha
Helix 28	AD1	A	686	710	Right-handed alpha
Helix 29	AD2	A	717	733	Right-handed alpha
Helix 30	AD3	A	738	752	Right-handed alpha
Helix 31	AD4	A	768	773	Right-handed alpha
Helix 32	AD5	A	778	789	Right-handed alpha
Helix 33	AD6	A	795	799	Right-handed 310
Helix 34	AD7	A	833	842	Right-handed alpha
Helix 35	AD8	A	846	850	Right-handed 310
Helix 36	AD9	A	853	867	Right-handed alpha
Helix 37	AE1	A	868	872	Right-handed 310
Helix 38	AE2	A	874	896	Right-handed alpha
Helix 39	AE3	A	912	917	Right-handed alpha
Helix 40	AE4	A	918	925	Right-handed alpha
Helix 41	AE5	B	118	125	Right-handed alpha
Helix 42	AE6	B	134	143	Right-handed alpha
Helix 43	AE7	B	176	180	Right-handed 310
Helix 44	AE8	C	2	20	Right-handed alpha
Helix 45	AE9	C	21	24	Right-handed 310
Helix 46	AF1	C	25	42	Right-handed alpha
Helix 47	AF2	C	44	62	Right-handed alpha
Helix 48	AF3	D	123	133	Right-handed alpha
Helix 49	AF4	D	139	149	Right-handed alpha
Helix 50	AF5	D	153	159	Right-handed alpha
Helix 51	AF6	D	170	200	Right-handed alpha
Helix 52	AF7	D	206	210	Right-handed 310
Helix 53	AF8	D	234	249	Right-handed alpha
Helix 54	AF9	D	250	260	Right-handed 310
Helix 55	AG1	D	275	287	Right-handed alpha
Helix 56	AG2	D	297	301	Right-handed 310
Helix 57	AG3	D	303	319	Right-handed alpha
Helix 58	AG4	D	322	326	Right-handed 310
Helix 59	AG5	D	368	377	Right-handed alpha
Helix 60	AG6	D	377	385	Right-handed alpha
Helix 61	AG7	D	416	426	Right-handed alpha
Helix 62	AG8	D	447	455	Right-handed alpha
Helix 63	AG9	D	456	459	Right-handed 310
Helix 64	AH1	D	465	479	Right-handed alpha
Helix 65	AH2	D	489	493	Right-handed 310
Helix 66	AH3	D	505	509	Right-handed 310
Helix 67	AH4	D	511	519	Right-handed alpha
Helix 68	AH5	D	520	532	Right-handed alpha
Helix 69	AH6	D	561	581	Right-handed alpha
Helix 70	AH7	D	596	607	Right-handed alpha
Helix 71	AH8	D	621	626	Right-handed alpha
Helix 72	AH9	D	627	640	Right-handed alpha
Helix 73	AI1	D	641	643	Right-handed 310
Helix 74	AI2	D	647	662	Right-handed alpha
Helix 75	AI3	D	686	710	Right-handed alpha
Helix 76	AI4	D	717	733	Right-handed alpha
Helix 77	AI5	D	738	752	Right-handed alpha
Helix 78	AI6	D	768	773	Right-handed alpha
Helix 79	AI7	D	778	789	Right-handed alpha
Helix 80	AI8	D	795	799	Right-handed 310
Helix 81	AI9	D	833	842	Right-handed alpha
Helix 82	AJ1	D	846	850	Right-handed 310
Helix 83	AJ2	D	853	867	Right-handed alpha
Helix 84	AJ3	D	868	872	Right-handed 310
Helix 85	AJ4	D	874	896	Right-handed alpha
Helix 86	AJ5	D	912	917	Right-handed alpha
Helix 87	AJ6	D	918	925	Right-handed alpha
Helix 88	AJ7	E	118	125	Right-handed alpha
Helix 89	AJ8	E	134	143	Right-handed alpha
Helix 90	AJ9	E	176	180	Right-handed 310
Helix 91	AK1	F	2	20	Right-handed alpha
Helix 92	AK2	F	21	24	Right-handed 310
Helix 93	AK3	F	25	42	Right-handed alpha
Helix 94	AK4	F	44	62	Right-handed alpha

There are 14 sheets in PDB entry 7OYG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	38	first strand
Strand 2	A	43	49	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	201	202	first strand
Strand 2	A	223	224	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	352	355	first strand
Strand 2	A	338	348	anti-parallel
Strand 3	A	327	335	anti-parallel
Strand 4	B	115	116	anti-parallel

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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	556	559	first strand
Strand 2	A	539	544	anti-parallel
Strand 3	A	666	669	parallel
Strand 4	A	672	675	anti-parallel
Strand 5	A	396	400	anti-parallel
Strand 6	A	386	390	anti-parallel
Strand 7	B	127	132	parallel
Strand 8	B	184	190	anti-parallel
Strand 9	B	152	160	anti-parallel
Strand 10	B	146	149	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	414	415	first strand
Strand 2	A	843	844	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	753	758	first strand
Strand 2	A	761	767	anti-parallel
Strand 3	A	612	617	anti-parallel
Strand 4	A	800	802	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	815	822	first strand
Strand 2	A	825	832	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	32	38	first strand
Strand 2	D	43	49	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	201	202	first strand
Strand 2	D	223	224	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	352	355	first strand
Strand 2	D	338	348	anti-parallel
Strand 3	D	327	335	anti-parallel
Strand 4	E	115	116	anti-parallel

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There are 10 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	556	559	first strand
Strand 2	D	539	544	anti-parallel
Strand 3	D	666	669	parallel
Strand 4	D	672	675	anti-parallel
Strand 5	D	396	400	anti-parallel
Strand 6	D	386	390	anti-parallel
Strand 7	E	127	132	parallel
Strand 8	E	184	190	anti-parallel
Strand 9	E	152	160	anti-parallel
Strand 10	E	146	149	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	414	415	first strand
Strand 2	D	843	844	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	753	758	first strand
Strand 2	D	761	767	anti-parallel
Strand 3	D	612	617	anti-parallel
Strand 4	D	800	802	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	815	822	first strand
Strand 2	D	825	832	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7OYG

Analysis of interatomic Contacts of Structural Units in PDB entry:
7OYG