Analysis of interatomic Contacts of Structural Units in PDB entry:
7P00

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7P00 entry

There are 6 chains in PDB entry 7P00 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
H	ASP 18	LEU 264
B	ARG 8	ASN 340
G	ALA 12	GLU 63
A	CYS 3	VAL 377
R	PRO 22	ALA 319
P	ARG 1	MET 11

There are 31 helices in PDB entry 7P00. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	70	73	Right-handed 310
Helix 2	AA2	H	104	108	Right-handed 310
Helix 3	AA3	H	237	241	Right-handed 310
Helix 4	AA4	B	9	26	Right-handed alpha
Helix 5	AA5	B	29	34	Right-handed alpha
Helix 6	AA6	G	13	25	Right-handed alpha
Helix 7	AA7	G	29	44	Right-handed alpha
Helix 8	AA8	A	6	33	Right-handed alpha
Helix 9	AA9	A	45	49	Right-handed 310
Helix 10	AB1	A	224	229	Right-handed alpha
Helix 11	AB2	A	230	232	Right-handed 310
Helix 12	AB3	A	248	261	Right-handed alpha
Helix 13	AB4	A	263	267	Right-handed 310
Helix 14	AB5	A	276	287	Right-handed alpha
Helix 15	AB6	A	290	295	Right-handed alpha
Helix 16	AB7	A	296	300	Right-handed 310
Helix 17	AB8	A	314	335	Right-handed alpha
Helix 18	AB9	A	353	374	Right-handed alpha
Helix 19	AC1	R	28	60	Right-handed alpha
Helix 20	AC2	R	61	64	Right-handed 310
Helix 21	AC3	R	65	67	Right-handed 310
Helix 22	AC4	R	68	84	Right-handed alpha
Helix 23	AC5	R	84	96	Right-handed alpha
Helix 24	AC6	R	100	136	Right-handed alpha
Helix 25	AC7	R	143	168	Right-handed alpha
Helix 26	AC8	R	190	205	Right-handed alpha
Helix 27	AC9	R	205	225	Right-handed alpha
Helix 28	AD1	R	237	274	Right-handed alpha
Helix 29	AD2	R	282	296	Right-handed alpha
Helix 30	AD3	R	296	309	Right-handed alpha
Helix 31	AD4	R	309	319	Right-handed alpha

There are 17 sheets in PDB entry 7P00. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	20	24	first strand
Strand 2	H	35	42	anti-parallel
Strand 3	H	95	100	anti-parallel
Strand 4	H	85	90	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	28	29	first strand
Strand 2	H	132	136	parallel
Strand 3	H	109	116	anti-parallel
Strand 4	H	50	56	anti-parallel
Strand 5	H	62	68	anti-parallel
Strand 6	H	75	77	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	28	29	first strand
Strand 2	H	132	136	parallel
Strand 3	H	109	116	anti-parallel
Strand 4	H	127	128	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	157	158	first strand
Strand 2	H	172	178	anti-parallel
Strand 3	H	228	233	anti-parallel
Strand 4	H	222	224	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	163	165	first strand
Strand 2	H	260	263	parallel
Strand 3	H	242	248	anti-parallel
Strand 4	H	191	196	anti-parallel
Strand 5	H	203	207	anti-parallel
Strand 6	H	211	212	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	51	first strand
Strand 2	B	336	340	anti-parallel
Strand 3	B	327	330	anti-parallel
Strand 4	B	317	320	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	88	94	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	102	105	first strand
Strand 2	B	111	115	anti-parallel
Strand 3	B	120	125	anti-parallel
Strand 4	B	134	140	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	148	153	first strand
Strand 2	B	156	160	anti-parallel
Strand 3	B	166	170	anti-parallel
Strand 4	B	175	180	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	199	203	anti-parallel
Strand 3	B	208	211	anti-parallel
Strand 4	B	218	222	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	231	234	first strand
Strand 2	B	240	244	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	259	264	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	285	289	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	294	298	first strand
Strand 2	B	303	308	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	37	first strand
Strand 2	A	210	215	parallel
Strand 3	A	202	207	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	236	237	first strand
Strand 2	A	269	270	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	240	242	first strand
Strand 2	A	273	275	parallel
Strand 3	A	345	346	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	169	173	first strand
Strand 2	R	178	182	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7P00

Analysis of interatomic Contacts of Structural Units in PDB entry:
7P00