Analysis of interatomic Contacts of Structural Units in PDB entry:
7P16


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7P16 entry

There are 2 chains in PDB entry 7P16 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1HIS 344
B
 SER 6SER 131
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 7P16. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 13Right-handed alpha
Helix 2
AA2
A
14 36Right-handed alpha
Helix 3
AA3
A
37 67Right-handed alpha
Helix 4
AA4
A
82 86Right-handed alpha
Helix 5
AA5
A
87 105Right-handed alpha
Helix 6
AA6
A
120 141Right-handed alpha
Helix 7
AA7
A
143 156Right-handed alpha
Helix 8
AA8
A
161 190Right-handed alpha
Helix 9
AA9
A
193 197Right-handed 310
Helix 10
AB1
A
198 227Right-handed alpha
Helix 11
AB2
A
227 250Right-handed alpha
Helix 12
AB3
A
256 274Right-handed alpha
Helix 13
AB4
A
277 281Right-handed 310
Helix 14
AB5
A
284 308Right-handed alpha
Helix 15
AB6
A
314 343Right-handed alpha
Helix 16
AB7
B
67 71Right-handed 310
Helix 17
AB8
B
93 97Right-handed 310
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There are 3 sheets in PDB entry 7P16. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 13first strand
Strand 2
B
25 31anti-parallel
Strand 3
B
84 88anti-parallel
Strand 4
B
75 79anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
17 18first strand
Strand 2
B
126 130parallel
Strand 3
B
98 101anti-parallel
Strand 4
B
37 45anti-parallel
Strand 5
B
52 58anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
17 18first strand
Strand 2
B
126 130parallel
Strand 3
B
98 101anti-parallel
Strand 4
B
37 45anti-parallel
Strand 5
B
104 106anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il