Analysis of interatomic Contacts of Structural Units in PDB entry:
7P1L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7P1L entry

There are 2 chains in PDB entry 7P1L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 50GLY 365
B
 GLN 50GLY 365
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 30 helices in PDB entry 7P1L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
90 92Right-handed 310
Helix 2
AA2
A
93 110Right-handed alpha
Helix 3
AA3
A
140 148Right-handed alpha
Helix 4
AA4
A
151 172Right-handed alpha
Helix 5
AA5
A
180 182Right-handed 310
Helix 6
AA6
A
200 204Right-handed 310
Helix 7
AA7
A
215 219Right-handed 310
Helix 8
AA8
A
231 249Right-handed alpha
Helix 9
AA9
A
257 268Right-handed alpha
Helix 10
AB1
A
277 288Right-handed alpha
Helix 11
AB2
A
291 295Right-handed 310
Helix 12
AB3
A
297 302Right-handed alpha
Helix 13
AB4
A
304 309Right-handed alpha
Helix 14
AB5
A
328 338Right-handed alpha
Helix 15
AB6
A
341 352Right-handed alpha
Helix 16
AB7
A
355 365Right-handed alpha
Helix 17
AB8
B
90 92Right-handed 310
Helix 18
AB9
B
93 110Right-handed alpha
Helix 19
AC1
B
140 148Right-handed alpha
Helix 20
AC2
B
151 172Right-handed alpha
Helix 21
AC3
B
180 182Right-handed 310
Helix 22
AC4
B
200 204Right-handed 310
Helix 23
AC5
B
232 249Right-handed alpha
Helix 24
AC6
B
257 268Right-handed alpha
Helix 25
AC7
B
277 288Right-handed alpha
Helix 26
AC8
B
291 295Right-handed 310
Helix 27
AC9
B
297 302Right-handed alpha
Helix 28
AD1
B
328 338Right-handed alpha
Helix 29
AD2
B
341 351Right-handed alpha
Helix 30
AD3
B
355 364Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 7P1L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 53first strand
Strand 2
A
56 65anti-parallel
Strand 3
A
68 75anti-parallel
Strand 4
A
81 88anti-parallel
Strand 5
A
127 133anti-parallel
Strand 6
A
118 123anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 139first strand
Strand 2
A
184 186anti-parallel
Strand 3
A
192 194anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 53first strand
Strand 2
B
56 64anti-parallel
Strand 3
B
68 75anti-parallel
Strand 4
B
81 88anti-parallel
Strand 5
B
127 132anti-parallel
Strand 6
B
118 123anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
138 139first strand
Strand 2
B
184 186anti-parallel
Strand 3
B
192 194anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il