Analysis of interatomic Contacts of Structural Units in PDB entry:
7P2D

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7P2D entry

There are 3 chains in PDB entry 7P2D (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 1	PHE 751
B	GLN 1	CYS 459
C	MET 1	ASN 84

There are 32 helices in PDB entry 7P2D. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	146	165	Right-handed alpha
Helix 2	AA2	A	185	192	Right-handed alpha
Helix 3	AA3	A	194	200	Right-handed alpha
Helix 4	AA4	A	210	221	Right-handed alpha
Helix 5	AA5	A	224	228	Right-handed 310
Helix 6	AA6	A	251	262	Right-handed alpha
Helix 7	AA7	A	273	276	Right-handed 310
Helix 8	AA8	A	277	288	Right-handed alpha
Helix 9	AA9	A	291	295	Right-handed alpha
Helix 10	AB1	A	301	303	Right-handed 310
Helix 11	AB2	A	304	321	Right-handed alpha
Helix 12	AB3	A	529	534	Right-handed alpha
Helix 13	AB4	A	558	562	Right-handed alpha
Helix 14	AB5	B	10	17	Right-handed alpha
Helix 15	AB6	B	35	38	Right-handed 310
Helix 16	AB7	B	42	49	Right-handed alpha
Helix 17	AB8	B	114	116	Right-handed 310
Helix 18	AB9	B	117	128	Right-handed alpha
Helix 19	AC1	B	128	139	Right-handed alpha
Helix 20	AC2	B	161	167	Right-handed alpha
Helix 21	AC3	B	191	201	Right-handed alpha
Helix 22	AC4	B	213	224	Right-handed alpha
Helix 23	AC5	B	224	229	Right-handed alpha
Helix 24	AC6	B	249	255	Right-handed 310
Helix 25	AC7	B	281	292	Right-handed alpha
Helix 26	AC8	B	304	310	Right-handed alpha
Helix 27	AC9	B	311	313	Right-handed 310
Helix 28	AD1	B	330	344	Right-handed alpha
Helix 29	AD2	B	436	440	Right-handed 310
Helix 30	AD3	C	28	32	Right-handed 310
Helix 31	AD4	C	62	65	Right-handed 310
Helix 32	AD5	C	87	91	Right-handed 310

There are 20 sheets in PDB entry 7P2D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	12	first strand
Strand 2	A	593	597	anti-parallel
Strand 3	A	586	589	anti-parallel
Strand 4	A	572	574	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	22	24	first strand
Strand 2	A	29	34	anti-parallel
Strand 3	A	46	51	anti-parallel
Strand 4	A	57	59	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	80	first strand
Strand 2	A	85	97	anti-parallel
Strand 3	A	100	110	anti-parallel
Strand 4	A	119	121	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	180	184	first strand
Strand 2	A	169	176	anti-parallel
Strand 3	A	133	140	parallel
Strand 4	A	234	241	parallel
Strand 5	A	265	271	parallel
Strand 6	A	296	299	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	341	343	first strand
Strand 2	A	348	352	anti-parallel
Strand 3	A	361	364	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	392	397	first strand
Strand 2	A	400	410	anti-parallel
Strand 3	A	413	422	anti-parallel
Strand 4	A	425	433	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	445	448	first strand
Strand 2	A	458	463	anti-parallel
Strand 3	A	474	479	anti-parallel
Strand 4	A	492	494	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	509	513	first strand
Strand 2	A	522	527	anti-parallel
Strand 3	A	536	540	anti-parallel
Strand 4	A	554	557	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	542	543	first strand
Strand 2	A	547	548	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	695	697	first strand
Strand 2	A	637	644	anti-parallel
Strand 3	A	602	610	anti-parallel
Strand 4	A	736	737	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	630	631	first strand
Strand 2	A	701	704	anti-parallel
Strand 3	A	675	676	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	684	690	first strand
Strand 2	A	657	665	anti-parallel
Strand 3	A	722	724	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	684	690	first strand
Strand 2	A	657	665	anti-parallel
Strand 3	A	714	719	anti-parallel
Strand 4	A	744	749	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	40	41	first strand
Strand 2	B	22	24	anti-parallel
Strand 3	B	56	57	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	62	65	first strand
Strand 2	B	80	85	anti-parallel
Strand 3	B	414	421	parallel
Strand 4	B	402	409	anti-parallel
Strand 5	B	345	349	anti-parallel
Strand 6	B	376	378	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	77	first strand
Strand 2	B	90	98	anti-parallel
Strand 3	B	386	395	anti-parallel
Strand 4	B	356	363	anti-parallel
Strand 5	B	369	373	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	182	189	first strand
Strand 2	B	143	149	anti-parallel
Strand 3	B	106	112	parallel
Strand 4	B	235	241	parallel
Strand 5	B	294	301	parallel
Strand 6	B	319	323	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	8	first strand
Strand 2	C	19	26	anti-parallel
Strand 3	C	78	83	anti-parallel
Strand 4	C	68	73	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	14	first strand
Strand 2	C	115	120	parallel
Strand 3	C	92	98	anti-parallel
Strand 4	C	35	40	anti-parallel
Strand 5	C	47	52	anti-parallel
Strand 6	C	58	60	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	14	first strand
Strand 2	C	115	120	parallel
Strand 3	C	92	98	anti-parallel
Strand 4	C	110	111	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7P2D

Analysis of interatomic Contacts of Structural Units in PDB entry:
7P2D