Analysis of interatomic Contacts of Structural Units in PDB entry:
7P2P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7P2P entry

There are 4 chains in PDB entry 7P2P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 13PRO 160
B
 ASN 2TYR 180
C
 TRP 51LYS 224
D
 PRO 66SER 151
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 7P2P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 43Right-handed alpha
Helix 2
AA2
A
148 158Right-handed alpha
Helix 3
AA3
B
4 30Right-handed alpha
Helix 4
AA4
C
53 72Right-handed alpha
Helix 5
AA5
C
79 104Right-handed alpha
Helix 6
AA6
C
110 136Right-handed alpha
Helix 7
AA7
C
204 207Right-handed 310
Helix 8
AA8
C
208 224Right-handed alpha
Helix 9
AA9
D
81 110Right-handed alpha
Helix 10
AB1
D
111 131Right-handed alpha
Helix 11
AB2
D
134 140Right-handed alpha
Helix 12
AB3
D
141 144Right-handed 310
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There are 8 sheets in PDB entry 7P2P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 51first strand
Strand 2
A
66 67anti-parallel
Strand 3
A
145 146anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 87first strand
Strand 2
A
92 97anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 101first strand
Strand 2
B
100 103anti-parallel
Strand 3
B
92 94anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
110 111first strand
Strand 2
A
133 134anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 52first strand
Strand 2
B
63 68anti-parallel
Strand 3
B
129 130anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 71first strand
Strand 2
B
119 120anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
84 90first strand
Strand 2
B
142 151anti-parallel
Strand 3
B
159 168anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
75 77first strand
Strand 2
C
139 144anti-parallel
Strand 3
C
156 162anti-parallel
Strand 4
C
170 178anti-parallel
Strand 5
C
183 191anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il