Analysis of interatomic Contacts of Structural Units in PDB entry:
7P38

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7P38 entry

There are 2 chains in PDB entry 7P38 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 446	ASN 1277
B	THR 445	GLN 883

There are 68 helices in PDB entry 7P38. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	449	454	Right-handed 310
Helix 2	AA2	A	500	502	Right-handed 310
Helix 3	AA3	A	506	520	Right-handed alpha
Helix 4	AA4	A	524	528	Right-handed 310
Helix 5	AA5	A	542	565	Right-handed alpha
Helix 6	AA6	A	567	579	Right-handed alpha
Helix 7	AA7	A	585	590	Right-handed 310
Helix 8	AA8	A	600	607	Right-handed 310
Helix 9	AA9	A	616	621	Right-handed 310
Helix 10	AB1	A	644	659	Right-handed alpha
Helix 11	AB2	A	660	666	Right-handed alpha
Helix 12	AB3	A	680	684	Right-handed 310
Helix 13	AB4	A	686	701	Right-handed alpha
Helix 14	AB5	A	705	712	Right-handed alpha
Helix 15	AB6	A	721	730	Right-handed alpha
Helix 16	AB7	A	739	748	Right-handed alpha
Helix 17	AB8	A	758	763	Right-handed alpha
Helix 18	AB9	A	786	802	Right-handed alpha
Helix 19	AC1	A	810	812	Right-handed 310
Helix 20	AC2	A	813	823	Right-handed alpha
Helix 21	AC3	A	833	843	Right-handed alpha
Helix 22	AC4	A	853	857	Right-handed alpha
Helix 23	AC5	A	870	885	Right-handed alpha
Helix 24	AC6	A	917	921	Right-handed 310
Helix 25	AC7	A	945	949	Right-handed 310
Helix 26	AC8	A	1057	1065	Right-handed alpha
Helix 27	AC9	A	1065	1073	Right-handed alpha
Helix 28	AD1	A	1114	1128	Right-handed alpha
Helix 29	AD2	A	1181	1189	Right-handed alpha
Helix 30	AD3	A	1192	1200	Right-handed alpha
Helix 31	AD4	A	1201	1205	Right-handed 310
Helix 32	AD5	A	1225	1227	Right-handed 310
Helix 33	AD6	A	1266	1271	Right-handed alpha
Helix 34	AD7	A	1271	1276	Right-handed alpha
Helix 35	AD8	B	449	454	Right-handed 310
Helix 36	AD9	B	500	502	Right-handed 310
Helix 37	AE1	B	506	520	Right-handed alpha
Helix 38	AE2	B	524	528	Right-handed 310
Helix 39	AE3	B	542	565	Right-handed alpha
Helix 40	AE4	B	567	579	Right-handed alpha
Helix 41	AE5	B	585	590	Right-handed 310
Helix 42	AE6	B	600	607	Right-handed 310
Helix 43	AE7	B	616	621	Right-handed 310
Helix 44	AE8	B	644	659	Right-handed alpha
Helix 45	AE9	B	660	666	Right-handed alpha
Helix 46	AF1	B	680	684	Right-handed 310
Helix 47	AF2	B	686	701	Right-handed alpha
Helix 48	AF3	B	705	712	Right-handed alpha
Helix 49	AF4	B	721	730	Right-handed alpha
Helix 50	AF5	B	739	749	Right-handed alpha
Helix 51	AF6	B	758	763	Right-handed alpha
Helix 52	AF7	B	786	798	Right-handed alpha
Helix 53	AF8	B	810	812	Right-handed 310
Helix 54	AF9	B	813	823	Right-handed alpha
Helix 55	AG1	B	833	843	Right-handed alpha
Helix 56	AG2	B	853	857	Right-handed alpha
Helix 57	AG3	B	870	885	Right-handed alpha
Helix 58	AG4	B	917	921	Right-handed 310
Helix 59	AG5	B	945	949	Right-handed 310
Helix 60	AG6	B	1057	1065	Right-handed alpha
Helix 61	AG7	B	1065	1073	Right-handed alpha
Helix 62	AG8	B	1114	1128	Right-handed alpha
Helix 63	AG9	B	1181	1189	Right-handed alpha
Helix 64	AH1	B	1192	1200	Right-handed alpha
Helix 65	AH2	B	1201	1205	Right-handed 310
Helix 66	AH3	B	1225	1227	Right-handed 310
Helix 67	AH4	B	1266	1271	Right-handed alpha
Helix 68	AH5	B	1271	1276	Right-handed alpha

There are 18 sheets in PDB entry 7P38. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	475	476	first strand
Strand 2	A	497	498	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	480	482	first strand
Strand 2	A	488	490	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1140	1141	first strand
Strand 2	A	638	640	anti-parallel
Strand 3	A	1229	1233	anti-parallel
Strand 4	A	594	597	anti-parallel
Strand 5	A	1146	1155	anti-parallel
Strand 6	A	1172	1179	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	623	624	first strand
Strand 2	B	1168	1169	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	675	679	first strand
Strand 2	A	715	716	parallel
Strand 3	A	735	737	parallel
Strand 4	A	780	783	parallel
Strand 5	A	848	852	parallel
Strand 6	A	1040	1042	parallel
Strand 7	A	1076	1079	parallel
Strand 8	A	1131	1137	parallel
Strand 9	A	675	679	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	889	893	first strand
Strand 2	A	898	903	anti-parallel
Strand 3	A	925	930	anti-parallel
Strand 4	A	998	1006	anti-parallel
Strand 5	A	952	959	anti-parallel
Strand 6	A	976	978	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	964	965	first strand
Strand 2	A	952	959	anti-parallel
Strand 3	A	998	1006	anti-parallel
Strand 4	A	992	993	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	938	943	first strand
Strand 2	A	984	989	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1084	1085	first strand
Strand 2	A	1097	1099	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1168	1169	first strand
Strand 2	B	623	624	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	475	476	first strand
Strand 2	B	497	498	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	480	482	first strand
Strand 2	B	488	490	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1140	1141	first strand
Strand 2	B	638	640	anti-parallel
Strand 3	B	1229	1233	anti-parallel
Strand 4	B	594	597	anti-parallel
Strand 5	B	1146	1155	anti-parallel
Strand 6	B	1172	1179	anti-parallel

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There are 9 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	675	679	first strand
Strand 2	B	715	716	parallel
Strand 3	B	735	737	parallel
Strand 4	B	780	783	parallel
Strand 5	B	848	852	parallel
Strand 6	B	1040	1042	parallel
Strand 7	B	1076	1079	parallel
Strand 8	B	1131	1137	parallel
Strand 9	B	675	679	parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	889	895	first strand
Strand 2	B	898	903	anti-parallel
Strand 3	B	925	930	anti-parallel
Strand 4	B	998	1006	anti-parallel
Strand 5	B	952	959	anti-parallel
Strand 6	B	976	978	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	964	965	first strand
Strand 2	B	952	959	anti-parallel
Strand 3	B	998	1006	anti-parallel
Strand 4	B	992	993	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	938	943	first strand
Strand 2	B	984	989	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1084	1085	first strand
Strand 2	B	1097	1099	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7P38

Analysis of interatomic Contacts of Structural Units in PDB entry:
7P38