Analysis of interatomic Contacts of Structural Units in PDB entry:
7P41

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7P41 entry

There is 1 chain in PDB entry 7P41 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	MET 52	GLY 495

There are 19 helices in PDB entry 7P41. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	109	115	Right-handed 310
Helix 2	AA2	D	130	140	Right-handed alpha
Helix 3	AA3	D	166	179	Right-handed alpha
Helix 4	AA4	D	187	209	Right-handed alpha
Helix 5	AA5	D	212	219	Right-handed alpha
Helix 6	AA6	D	220	235	Right-handed alpha
Helix 7	AA7	D	235	241	Right-handed alpha
Helix 8	AA8	D	242	251	Right-handed alpha
Helix 9	AA9	D	253	262	Right-handed alpha
Helix 10	AB1	D	264	270	Right-handed alpha
Helix 11	AB2	D	270	284	Right-handed alpha
Helix 12	AB3	D	321	333	Right-handed alpha
Helix 13	AB4	D	350	355	Right-handed alpha
Helix 14	AB5	D	377	385	Right-handed alpha
Helix 15	AB6	D	392	397	Right-handed 310
Helix 16	AB7	D	408	413	Right-handed 310
Helix 17	AB8	D	432	437	Right-handed 310
Helix 18	AB9	D	449	457	Right-handed alpha
Helix 19	AC1	D	460	464	Right-handed 310

There are 5 sheets in PDB entry 7P41. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	72	74	first strand
Strand 2	D	53	63	anti-parallel
Strand 3	D	490	493	anti-parallel
Strand 4	D	415	418	anti-parallel
Strand 5	D	421	430	anti-parallel
Strand 6	D	472	481	anti-parallel
Strand 7	D	372	376	anti-parallel
Strand 8	D	400	403	parallel
Strand 9	D	53	63	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	89	90	first strand
Strand 2	D	83	86	anti-parallel
Strand 3	D	76	80	anti-parallel
Strand 4	D	483	486	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	94	97	first strand
Strand 2	D	338	341	anti-parallel
Strand 3	D	313	319	anti-parallel
Strand 4	D	305	310	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	116	120	first strand
Strand 2	D	123	127	anti-parallel
Strand 3	D	293	296	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	142	147	first strand
Strand 2	D	153	156	anti-parallel
Strand 3	D	159	162	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7P41

Analysis of interatomic Contacts of Structural Units in PDB entry:
7P41