Analysis of interatomic Contacts of Structural Units in PDB entry:
7P8M

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7P8M entry

There are 2 chains in PDB entry 7P8M (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 2	PHE 406
C	SER -1	PHE 406

There are 25 helices in PDB entry 7P8M. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	17	Right-handed 310
Helix 2	AA2	A	29	54	Right-handed alpha
Helix 3	AA3	A	108	125	Right-handed alpha
Helix 4	AA4	A	144	154	Right-handed alpha
Helix 5	AA5	A	174	188	Right-handed alpha
Helix 6	AA6	A	189	196	Right-handed alpha
Helix 7	AA7	A	225	227	Right-handed 310
Helix 8	AA8	A	229	252	Right-handed alpha
Helix 9	AA9	A	266	270	Right-handed 310
Helix 10	AB1	A	279	284	Right-handed 310
Helix 11	AB2	A	318	336	Right-handed alpha
Helix 12	AB3	A	372	390	Right-handed alpha
Helix 13	AB4	A	391	400	Right-handed alpha
Helix 14	AB5	C	13	17	Right-handed 310
Helix 15	AB6	C	29	54	Right-handed alpha
Helix 16	AB7	C	108	125	Right-handed alpha
Helix 17	AB8	C	147	154	Right-handed alpha
Helix 18	AB9	C	174	188	Right-handed alpha
Helix 19	AC1	C	189	196	Right-handed alpha
Helix 20	AC2	C	225	227	Right-handed 310
Helix 21	AC3	C	229	252	Right-handed alpha
Helix 22	AC4	C	279	283	Right-handed 310
Helix 23	AC5	C	318	335	Right-handed alpha
Helix 24	AC6	C	372	390	Right-handed alpha
Helix 25	AC7	C	390	400	Right-handed alpha

There are 13 sheets in PDB entry 7P8M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	8	first strand
Strand 2	A	360	367	parallel
Strand 3	A	340	348	anti-parallel
Strand 4	A	166	171	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	19	25	first strand
Strand 2	A	199	210	anti-parallel
Strand 3	A	213	223	anti-parallel
Strand 4	A	256	261	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	19	25	first strand
Strand 2	A	199	210	anti-parallel
Strand 3	A	213	223	anti-parallel
Strand 4	A	274	275	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	134	138	first strand
Strand 2	A	84	92	parallel
Strand 3	A	141	142	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	134	138	first strand
Strand 2	A	84	92	parallel
Strand 3	A	59	67	anti-parallel
Strand 4	A	287	288	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	70	72	first strand
Strand 2	A	79	82	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	95	98	first strand
Strand 2	A	103	106	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	8	first strand
Strand 2	C	360	367	parallel
Strand 3	C	340	348	anti-parallel
Strand 4	C	166	171	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	19	25	first strand
Strand 2	C	199	210	anti-parallel
Strand 3	C	213	223	anti-parallel
Strand 4	C	256	261	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	19	25	first strand
Strand 2	C	199	210	anti-parallel
Strand 3	C	213	223	anti-parallel
Strand 4	C	274	275	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	103	106	first strand
Strand 2	C	84	98	anti-parallel
Strand 3	C	141	146	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	134	138	first strand
Strand 2	C	84	98	parallel
Strand 3	C	59	67	anti-parallel
Strand 4	C	287	288	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	70	72	first strand
Strand 2	C	79	82	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7P8M

Analysis of interatomic Contacts of Structural Units in PDB entry:
7P8M