Analysis of interatomic Contacts of Structural Units in PDB entry:
7P8S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7P8S entry

There is 1 chain in PDB entry 7P8S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 12ASN 311
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 7P8S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 17Right-handed 310
Helix 2
AA2
A
218 223Right-handed 310
Helix 3
AA3
A
225 229Right-handed 310
Helix 4
AA4
A
230 235Right-handed alpha
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There are 6 sheets in PDB entry 7P8S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 36first strand
Strand 2
A
39 50anti-parallel
Strand 3
A
55 66anti-parallel
Strand 4
A
72 83anti-parallel
Strand 5
A
241 247anti-parallel
Strand 6
A
119 125anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 36first strand
Strand 2
A
39 50anti-parallel
Strand 3
A
55 66anti-parallel
Strand 4
A
72 83anti-parallel
Strand 5
A
236 237anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 90first strand
Strand 2
A
99 114anti-parallel
Strand 3
A
183 190anti-parallel
Strand 4
A
172 179anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 90first strand
Strand 2
A
99 114anti-parallel
Strand 3
A
254 273anti-parallel
Strand 4
A
277 299anti-parallel
Strand 5
A
304 308anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 150first strand
Strand 2
A
134 142anti-parallel
Strand 3
A
161 168anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 193first strand
Strand 2
A
200 201anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il