Analysis of interatomic Contacts of Structural Units in PDB entry:
7P8V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7P8V entry

There are 4 chains in PDB entry 7P8V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLN 331
B
 MET 1GLN 331
C
 G 2 A 23
D
 T 26 A 38
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 7P8V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 20Right-handed alpha
Helix 2
AA2
A
22 38Right-handed alpha
Helix 3
AA3
A
64 72Right-handed alpha
Helix 4
AA4
A
82 88Right-handed alpha
Helix 5
AA5
A
96 105Right-handed alpha
Helix 6
AA6
A
154 159Right-handed alpha
Helix 7
AA7
A
163 182Right-handed alpha
Helix 8
AA8
A
208 223Right-handed alpha
Helix 9
AA9
A
265 279Right-handed alpha
Helix 10
AB1
A
314 330Right-handed alpha
Helix 11
AB2
B
7 20Right-handed alpha
Helix 12
AB3
B
22 36Right-handed alpha
Helix 13
AB4
B
64 73Right-handed alpha
Helix 14
AB5
B
82 88Right-handed alpha
Helix 15
AB6
B
98 105Right-handed alpha
Helix 16
AB7
B
154 160Right-handed alpha
Helix 17
AB8
B
163 182Right-handed alpha
Helix 18
AB9
B
208 217Right-handed alpha
Helix 19
AC1
B
217 223Right-handed alpha
Helix 20
AC2
B
265 279Right-handed alpha
Helix 21
AC3
B
295 297Right-handed 310
Helix 22
AC4
B
314 330Right-handed alpha
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There are 9 sheets in PDB entry 7P8V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 5first strand
Strand 2
B
76 77anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 137first strand
Strand 2
A
120 126anti-parallel
Strand 3
A
107 113anti-parallel
Strand 4
A
142 148anti-parallel
Strand 5
A
53 57anti-parallel
Strand 6
A
41 47anti-parallel
Strand 7
A
186 191parallel
Strand 8
A
194 199anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 77first strand
Strand 2
B
4 5anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 231first strand
Strand 2
A
234 241anti-parallel
Strand 3
A
288 293anti-parallel
Strand 4
A
254 258parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
299 300first strand
Strand 2
A
311 312anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
107 113first strand
Strand 2
B
142 148anti-parallel
Strand 3
B
53 57anti-parallel
Strand 4
B
41 46anti-parallel
Strand 5
B
186 191parallel
Strand 6
B
194 199anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
120 126first strand
Strand 2
B
131 137anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
224 230first strand
Strand 2
B
235 241anti-parallel
Strand 3
B
288 293anti-parallel
Strand 4
B
254 258parallel
Strand 5
B
262 263anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
299 300first strand
Strand 2
B
311 312anti-parallel
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