Analysis of interatomic Contacts of Structural Units in PDB entry:
7P93


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7P93 entry

There are 5 chains in PDB entry 7P93 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 30GLY 309
B
 GLY 39ASP 40
B
 GLY 42GLU 46
M
 ASP 34ASP 40
M
 GLY 42ALA 43
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 7P93. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
218 223Right-handed 310
Helix 2
AA2
A
225 229Right-handed 310
Helix 3
AA3
A
230 235Right-handed alpha
Helix 4
AA4
M
39 43Right-handed 310
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There are 6 sheets in PDB entry 7P93. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 36first strand
Strand 2
A
39 50anti-parallel
Strand 3
A
55 65anti-parallel
Strand 4
A
71 83anti-parallel
Strand 5
A
241 248anti-parallel
Strand 6
A
120 125anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 36first strand
Strand 2
A
39 50anti-parallel
Strand 3
A
55 65anti-parallel
Strand 4
A
71 83anti-parallel
Strand 5
A
236 237anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 90first strand
Strand 2
A
99 113anti-parallel
Strand 3
A
183 190anti-parallel
Strand 4
A
172 179anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 90first strand
Strand 2
A
99 113anti-parallel
Strand 3
A
254 273anti-parallel
Strand 4
A
277 299anti-parallel
Strand 5
A
304 309anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 150first strand
Strand 2
A
134 142anti-parallel
Strand 3
A
161 168anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 195first strand
Strand 2
A
198 201anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il