Analysis of interatomic Contacts of Structural Units in PDB entry:
7P98


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7P98 entry

There are 2 chains in PDB entry 7P98 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2PRO 380
B
 HIS 3PRO 380
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 7P98. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 22Right-handed alpha
Helix 2
AA2
A
23 25Right-handed 310
Helix 3
AA3
A
26 33Right-handed alpha
Helix 4
AA4
A
37 47Right-handed alpha
Helix 5
AA5
A
55 59Right-handed 310
Helix 6
AA6
A
64 79Right-handed alpha
Helix 7
AA7
A
79 100Right-handed alpha
Helix 8
AA8
A
101 110Right-handed alpha
Helix 9
AA9
A
111 113Right-handed 310
Helix 10
AB1
A
132 136Right-handed 310
Helix 11
AB2
A
159 162Right-handed 310
Helix 12
AB3
A
175 178Right-handed 310
Helix 13
AB4
A
229 267Right-handed alpha
Helix 14
AB5
A
277 307Right-handed alpha
Helix 15
AB6
A
311 338Right-handed alpha
Helix 16
AB7
A
338 343Right-handed alpha
Helix 17
AB8
A
344 347Right-handed 310
Helix 18
AB9
A
348 359Right-handed alpha
Helix 19
AC1
A
365 379Right-handed alpha
Helix 20
AC2
B
5 22Right-handed alpha
Helix 21
AC3
B
23 25Right-handed 310
Helix 22
AC4
B
26 34Right-handed alpha
Helix 23
AC5
B
37 47Right-handed alpha
Helix 24
AC6
B
55 59Right-handed 310
Helix 25
AC7
B
64 79Right-handed alpha
Helix 26
AC8
B
79 100Right-handed alpha
Helix 27
AC9
B
101 110Right-handed alpha
Helix 28
AD1
B
111 113Right-handed 310
Helix 29
AD2
B
132 136Right-handed 310
Helix 30
AD3
B
159 162Right-handed 310
Helix 31
AD4
B
172 178Right-handed 310
Helix 32
AD5
B
229 267Right-handed alpha
Helix 33
AD6
B
277 307Right-handed alpha
Helix 34
AD7
B
311 339Right-handed alpha
Helix 35
AD8
B
340 347Right-handed 310
Helix 36
AD9
B
348 360Right-handed alpha
Helix 37
AE1
B
365 379Right-handed alpha
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There are 6 sheets in PDB entry 7P98. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 123first strand
Strand 2
A
164 170parallel
Strand 3
A
180 186anti-parallel
Strand 4
A
223 224anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 143first strand
Strand 2
A
146 157anti-parallel
Strand 3
A
208 219anti-parallel
Strand 4
A
192 197anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
268 269first strand
Strand 2
A
272 273anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
120 123first strand
Strand 2
B
164 170parallel
Strand 3
B
180 186anti-parallel
Strand 4
B
223 224anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
139 143first strand
Strand 2
B
146 157anti-parallel
Strand 3
B
208 219anti-parallel
Strand 4
B
192 197anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
268 269first strand
Strand 2
B
272 273anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il