Analysis of interatomic Contacts of Structural Units in PDB entry:
7P9E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7P9E entry

There are 2 chains in PDB entry 7P9E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLN 315
B
 MET 1LYS 316
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 7P9E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 23Right-handed alpha
Helix 2
AA2
A
39 44Right-handed 310
Helix 3
AA3
A
58 73Right-handed alpha
Helix 4
AA4
A
121 126Right-handed alpha
Helix 5
AA5
A
133 138Right-handed alpha
Helix 6
AA6
A
140 144Right-handed 310
Helix 7
AA7
A
154 165Right-handed alpha
Helix 8
AA8
A
183 192Right-handed alpha
Helix 9
AA9
A
285 307Right-handed alpha
Helix 10
AB1
B
10 23Right-handed alpha
Helix 11
AB2
B
39 44Right-handed 310
Helix 12
AB3
B
58 73Right-handed alpha
Helix 13
AB4
B
121 126Right-handed alpha
Helix 14
AB5
B
133 138Right-handed alpha
Helix 15
AB6
B
140 144Right-handed 310
Helix 16
AB7
B
154 165Right-handed alpha
Helix 17
AB8
B
183 192Right-handed alpha
Helix 18
AB9
B
285 307Right-handed alpha
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There are 10 sheets in PDB entry 7P9E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 78first strand
Strand 2
A
28 30parallel
Strand 3
A
2 7parallel
Strand 4
A
100 108parallel
Strand 5
A
92 96anti-parallel
Strand 6
A
82 86anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 78first strand
Strand 2
A
28 30parallel
Strand 3
A
2 7parallel
Strand 4
A
100 108parallel
Strand 5
A
272 274parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 114first strand
Strand 2
A
240 242anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 131first strand
Strand 2
A
233 236parallel
Strand 3
A
147 151parallel
Strand 4
A
170 174parallel
Strand 5
A
196 199parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 209first strand
Strand 2
A
213 220anti-parallel
Strand 3
A
226 230anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
76 78first strand
Strand 2
B
28 30parallel
Strand 3
B
2 7parallel
Strand 4
B
99 108parallel
Strand 5
B
92 96anti-parallel
Strand 6
B
82 86anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
76 78first strand
Strand 2
B
28 30parallel
Strand 3
B
2 7parallel
Strand 4
B
99 108parallel
Strand 5
B
272 274parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
112 114first strand
Strand 2
B
240 242anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
130 131first strand
Strand 2
B
233 236parallel
Strand 3
B
147 151parallel
Strand 4
B
170 174parallel
Strand 5
B
196 199parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
202 209first strand
Strand 2
B
213 220anti-parallel
Strand 3
B
226 229anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il