Analysis of interatomic Contacts of Structural Units in PDB entry:
7P9M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7P9M entry

There are 2 chains in PDB entry 7P9M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLN 579
B
 GLN 3PRO 580
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 63 helices in PDB entry 7P9M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 17Right-handed alpha
Helix 2
AA2
A
33 44Right-handed alpha
Helix 3
AA3
A
58 65Right-handed 310
Helix 4
AA4
A
99 112Right-handed alpha
Helix 5
AA5
A
173 177Right-handed 310
Helix 6
AA6
A
179 189Right-handed alpha
Helix 7
AA7
A
194 213Right-handed alpha
Helix 8
AA8
A
227 239Right-handed alpha
Helix 9
AA9
A
250 257Right-handed alpha
Helix 10
AB1
A
265 276Right-handed alpha
Helix 11
AB2
A
285 297Right-handed alpha
Helix 12
AB3
A
305 309Right-handed 310
Helix 13
AB4
A
313 320Right-handed alpha
Helix 14
AB5
A
320 337Right-handed alpha
Helix 15
AB6
A
347 349Right-handed 310
Helix 16
AB7
A
350 362Right-handed alpha
Helix 17
AB8
A
364 368Right-handed 310
Helix 18
AB9
A
370 372Right-handed 310
Helix 19
AC1
A
373 390Right-handed alpha
Helix 20
AC2
A
398 413Right-handed alpha
Helix 21
AC3
A
419 430Right-handed alpha
Helix 22
AC4
A
437 445Right-handed alpha
Helix 23
AC5
A
452 462Right-handed alpha
Helix 24
AC6
A
478 482Right-handed 310
Helix 25
AC7
A
483 491Right-handed alpha
Helix 26
AC8
A
499 504Right-handed alpha
Helix 27
AC9
A
505 508Right-handed 310
Helix 28
AD1
A
518 524Right-handed alpha
Helix 29
AD2
A
525 534Right-handed alpha
Helix 30
AD3
A
536 546Right-handed alpha
Helix 31
AD4
A
555 557Right-handed 310
Helix 32
AD5
A
558 578Right-handed alpha
Helix 33
AD6
B
7 17Right-handed alpha
Helix 34
AD7
B
33 45Right-handed alpha
Helix 35
AD8
B
58 62Right-handed 310
Helix 36
AD9
B
99 112Right-handed alpha
Helix 37
AE1
B
156 161Right-handed alpha
Helix 38
AE2
B
173 177Right-handed 310
Helix 39
AE3
B
179 190Right-handed alpha
Helix 40
AE4
B
194 213Right-handed alpha
Helix 41
AE5
B
227 239Right-handed alpha
Helix 42
AE6
B
245 257Right-handed alpha
Helix 43
AE7
B
263 276Right-handed alpha
Helix 44
AE8
B
285 297Right-handed alpha
Helix 45
AE9
B
305 309Right-handed 310
Helix 46
AF1
B
310 320Right-handed alpha
Helix 47
AF2
B
320 338Right-handed alpha
Helix 48
AF3
B
347 349Right-handed 310
Helix 49
AF4
B
350 361Right-handed alpha
Helix 50
AF5
B
364 368Right-handed 310
Helix 51
AF6
B
370 372Right-handed 310
Helix 52
AF7
B
373 390Right-handed alpha
Helix 53
AF8
B
398 414Right-handed alpha
Helix 54
AF9
B
419 430Right-handed alpha
Helix 55
AG1
B
437 445Right-handed alpha
Helix 56
AG2
B
451 462Right-handed alpha
Helix 57
AG3
B
478 482Right-handed 310
Helix 58
AG4
B
483 491Right-handed alpha
Helix 59
AG5
B
502 508Right-handed 310
Helix 60
AG6
B
525 533Right-handed alpha
Helix 61
AG7
B
536 547Right-handed alpha
Helix 62
AG8
B
555 557Right-handed 310
Helix 63
AG9
B
558 578Right-handed alpha
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There are 7 sheets in PDB entry 7P9M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 3first strand
Strand 2
A
220 223anti-parallel
Strand 3
A
52 57parallel
Strand 4
A
93 98anti-parallel
Strand 5
A
20 21parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 155first strand
Strand 2
A
133 137anti-parallel
Strand 3
A
169 171anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
471 475first strand
Strand 2
A
510 514anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
67 68first strand
Strand 2
B
20 23anti-parallel
Strand 3
B
93 98parallel
Strand 4
B
52 57anti-parallel
Strand 5
B
220 223parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
73 75first strand
Strand 2
B
113 115parallel
Strand 3
B
131 137anti-parallel
Strand 4
B
152 155anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
73 75first strand
Strand 2
B
113 115parallel
Strand 3
B
131 137anti-parallel
Strand 4
B
169 171anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
471 475first strand
Strand 2
B
510 514anti-parallel
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