Analysis of interatomic Contacts of Structural Units in PDB entry:
7P9U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7P9U entry

There are 2 chains in PDB entry 7P9U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 168LEU 214
B
 THR 45ASP 499
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 7P9U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
178 208Right-handed alpha
Helix 2
AA2
B
46 58Right-handed alpha
Helix 3
AA3
B
60 63Right-handed 310
Helix 4
AA4
B
64 74Right-handed alpha
Helix 5
AA5
B
75 105Right-handed alpha
Helix 6
AA6
B
109 118Right-handed alpha
Helix 7
AA7
B
119 133Right-handed alpha
Helix 8
AA8
B
133 152Right-handed alpha
Helix 9
AA9
B
162 183Right-handed alpha
Helix 10
AB1
B
184 190Right-handed alpha
Helix 11
AB2
B
190 216Right-handed alpha
Helix 12
AB3
B
231 233Right-handed 310
Helix 13
AB4
B
234 246Right-handed alpha
Helix 14
AB5
B
264 292Right-handed alpha
Helix 15
AB6
B
293 299Right-handed alpha
Helix 16
AB7
B
302 312Right-handed alpha
Helix 17
AB8
B
318 349Right-handed alpha
Helix 18
AB9
B
352 357Right-handed 310
Helix 19
AC1
B
372 382Right-handed alpha
Helix 20
AC2
B
384 413Right-handed alpha
Helix 21
AC3
B
425 442Right-handed alpha
Helix 22
AC4
B
446 460Right-handed alpha
Helix 23
AC5
B
461 467Right-handed 310
Helix 24
AC6
B
478 493Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 7P9U.

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
358 359first strand
Strand 2
B
494 495anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il