Analysis of interatomic Contacts of Structural Units in PDB entry:
7PAB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7PAB entry

There are 2 chains in PDB entry 7PAB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 9	ARG 1333
C	GLY 16	TYR 1143

There are 31 helices in PDB entry 7PAB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	27	Right-handed alpha
Helix 2	AA2	A	65	77	Right-handed alpha
Helix 3	AA3	A	130	140	Right-handed alpha
Helix 4	AA4	A	173	189	Right-handed alpha
Helix 5	AA5	A	1082	1091	Right-handed alpha
Helix 6	AA6	A	1093	1102	Right-handed alpha
Helix 7	AA7	A	1121	1123	Right-handed 310
Helix 8	AA8	A	1144	1149	Right-handed alpha
Helix 9	AA9	A	1159	1169	Right-handed alpha
Helix 10	AB1	A	1173	1176	Right-handed 310
Helix 11	AB2	A	1177	1190	Right-handed alpha
Helix 12	AB3	A	1198	1207	Right-handed alpha
Helix 13	AB4	A	1208	1221	Right-handed alpha
Helix 14	AB5	A	1253	1264	Right-handed alpha
Helix 15	AB6	A	1298	1309	Right-handed alpha
Helix 16	AB7	A	1313	1327	Right-handed alpha
Helix 17	AB8	C	17	27	Right-handed alpha
Helix 18	AB9	C	65	77	Right-handed alpha
Helix 19	AC1	C	129	140	Right-handed alpha
Helix 20	AC2	C	173	188	Right-handed alpha
Helix 21	AC3	C	1084	1093	Right-handed alpha
Helix 22	AC4	C	1093	1103	Right-handed alpha
Helix 23	AC5	C	1121	1123	Right-handed 310
Helix 24	AC6	C	1144	1151	Right-handed alpha
Helix 25	AC7	C	1159	1169	Right-handed alpha
Helix 26	AC8	C	1173	1189	Right-handed alpha
Helix 27	AC9	C	1197	1207	Right-handed alpha
Helix 28	AD1	C	1208	1221	Right-handed alpha
Helix 29	AD2	C	1253	1264	Right-handed alpha
Helix 30	AD3	C	1298	1309	Right-handed alpha
Helix 31	AD4	C	1313	1326	Right-handed alpha

There are 11 sheets in PDB entry 7PAB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	33	first strand
Strand 2	A	52	57	anti-parallel
Strand 3	A	93	99	anti-parallel
Strand 4	A	84	89	anti-parallel
Strand 5	A	125	129	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	64	first strand
Strand 2	A	150	158	anti-parallel
Strand 3	A	161	171	anti-parallel
Strand 4	A	117	120	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	64	first strand
Strand 2	A	150	158	anti-parallel
Strand 3	A	161	171	anti-parallel
Strand 4	A	1104	1107	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1111	1113	first strand
Strand 2	A	1135	1140	anti-parallel
Strand 3	A	1127	1132	anti-parallel
Strand 4	A	1250	1252	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1118	1119	first strand
Strand 2	A	1267	1274	anti-parallel
Strand 3	A	1277	1284	anti-parallel
Strand 4	A	1239	1244	anti-parallel
Strand 5	A	1227	1232	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1310	1312	first strand
Strand 2	C	1310	1312	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	33	first strand
Strand 2	C	53	56	anti-parallel
Strand 3	C	94	98	anti-parallel
Strand 4	C	85	89	anti-parallel
Strand 5	C	125	128	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	61	64	first strand
Strand 2	C	150	158	anti-parallel
Strand 3	C	161	171	anti-parallel
Strand 4	C	117	120	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	61	64	first strand
Strand 2	C	150	158	anti-parallel
Strand 3	C	161	171	anti-parallel
Strand 4	C	1104	1107	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1111	1113	first strand
Strand 2	C	1135	1140	anti-parallel
Strand 3	C	1127	1132	anti-parallel
Strand 4	C	1250	1252	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1118	1119	first strand
Strand 2	C	1267	1274	anti-parallel
Strand 3	C	1277	1284	anti-parallel
Strand 4	C	1239	1244	anti-parallel
Strand 5	C	1227	1232	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7PAB

Analysis of interatomic Contacts of Structural Units in PDB entry:
7PAB