Analysis of interatomic Contacts of Structural Units in PDB entry:
7PAF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7PAF entry

There are 4 chains in PDB entry 7PAF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLN 5SER 128
A
 GLY 6ILE 290
C
 GLN 5SER 128
D
 GLY 6ILE 290
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 7PAF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
91 95Right-handed 310
Helix 2
AA2
A
7 31Right-handed alpha
Helix 3
AA3
A
35 59Right-handed alpha
Helix 4
AA4
A
72 83Right-handed alpha
Helix 5
AA5
A
83 98Right-handed alpha
Helix 6
AA6
A
100 109Right-handed alpha
Helix 7
AA7
A
109 120Right-handed alpha
Helix 8
AA8
A
127 144Right-handed alpha
Helix 9
AA9
A
153 178Right-handed alpha
Helix 10
AB1
A
183 207Right-handed alpha
Helix 11
AB2
A
211 214Right-handed 310
Helix 12
AB3
A
215 253Right-handed alpha
Helix 13
AB4
A
254 266Right-handed alpha
Helix 14
AB5
A
272 289Right-handed alpha
Helix 15
AB6
C
91 95Right-handed 310
Helix 16
AB7
D
7 31Right-handed alpha
Helix 17
AB8
D
35 59Right-handed alpha
Helix 18
AB9
D
72 83Right-handed alpha
Helix 19
AC1
D
83 98Right-handed alpha
Helix 20
AC2
D
100 109Right-handed alpha
Helix 21
AC3
D
109 120Right-handed alpha
Helix 22
AC4
D
127 144Right-handed alpha
Helix 23
AC5
D
153 178Right-handed alpha
Helix 24
AC6
D
183 207Right-handed alpha
Helix 25
AC7
D
210 214Right-handed 310
Helix 26
AC8
D
215 244Right-handed alpha
Helix 27
AC9
D
247 253Right-handed alpha
Helix 28
AD1
D
254 266Right-handed alpha
Helix 29
AD2
D
272 289Right-handed alpha
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There are 6 sheets in PDB entry 7PAF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 11first strand
Strand 2
B
21 30anti-parallel
Strand 3
B
84 88anti-parallel
Strand 4
B
72 75anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
14 17first strand
Strand 2
B
123 128parallel
Strand 3
B
96 103anti-parallel
Strand 4
B
37 41anti-parallel
Strand 5
B
51 56anti-parallel
Strand 6
B
62 64anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
14 17first strand
Strand 2
B
123 128parallel
Strand 3
B
96 103anti-parallel
Strand 4
B
118 119anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
6 11first strand
Strand 2
C
21 30anti-parallel
Strand 3
C
84 88anti-parallel
Strand 4
C
72 75anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
14 17first strand
Strand 2
C
123 128parallel
Strand 3
C
96 103anti-parallel
Strand 4
C
37 41anti-parallel
Strand 5
C
51 56anti-parallel
Strand 6
C
62 64anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
14 17first strand
Strand 2
C
123 128parallel
Strand 3
C
96 103anti-parallel
Strand 4
C
118 119anti-parallel
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